View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13241_high_13 (Length: 284)
Name: NF13241_high_13
Description: NF13241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13241_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 8382200 - 8381988
Alignment:
| Q |
19 |
tagagaagctcttacgagaacaaggatgtaaaggaaattcttatagacttgtgcttggggacttgaaggattcatataagatgggaaagcaagccaaatc |
118 |
Q |
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| T |
8382200 |
tagagaagctcttacgagaacaaggatgtaatggaaattcttatagacttgtgcttggggacttgaaggattcatataagatgggaaagaaagccaaatc |
8382101 |
T |
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| Q |
119 |
caaacccatggaactgtcggatgatataatccctcgtgtcattccctacattcaacaacttgttcaaatttacggtacgtacgttattctttactcattc |
218 |
Q |
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| T |
8382100 |
caaacccatggaactgtcggatgatataatccctcgtgtcattccctacattcaacaacttgttcaaatttacggtacgtacgttattctttactcaatc |
8382001 |
T |
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| Q |
219 |
gagcaacacttac |
231 |
Q |
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||||||||||||| |
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| T |
8382000 |
gagcaacacttac |
8381988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 30381638 - 30381794
Alignment:
| Q |
19 |
tagagaagctcttacgagaacaaggatgtaaaggaaattcttatagacttgtgcttggggacttgaaggattcatataagatgggaaagcaagccaaatc |
118 |
Q |
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|||||||||||||| |||||||||| | | |||||||||| ||||| || ||||||||||| | || ||| | |||||||| ||| |||||||||| |
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| T |
30381638 |
tagagaagctcttaagagaacaaggctttcaaggaaattcatataggattttgcttggggacataaaagatctttttaagatggaaaaagaagccaaatc |
30381737 |
T |
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| Q |
119 |
caaacccatggaactgtcggatgatataatccctcgtgtcattccctacattcaaca |
175 |
Q |
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| T |
30381738 |
aaaatccatgaatctctccgatgatataacaccacgtgtaattccctacatccaaca |
30381794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 30391109 - 30391257
Alignment:
| Q |
19 |
tagagaagctcttacgagaacaaggatgtaaaggaaattcttatagacttgtgcttggggacttgaaggattcatataagatgggaaagcaagccaaatc |
118 |
Q |
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|||||||||||||| ||||||||||| |||||| ||| ||||| ||| | |||| ||| ||||||| | | ||| |||| |||| |||||||||| |
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| T |
30391109 |
tagagaagctcttaagagaacaaggacttaaagggaatcaatataggcttttagttggagacatgaaggagtattttaacatggaaaaggaagccaaatc |
30391208 |
T |
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| Q |
119 |
caaacccatggaactgtcggatgatataatccctcgtgtcattccctac |
167 |
Q |
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|||| | ||| | || || |||||||| | || ||||||||||||||| |
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| T |
30391209 |
caaatctatgaacctctccgatgatatcacgccacgtgtcattccctac |
30391257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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