View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13241_high_14 (Length: 271)
Name: NF13241_high_14
Description: NF13241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13241_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 31790178 - 31790420
Alignment:
| Q |
1 |
atactcatttcttctacctcctgaaaatccaatccatttcaagaaaacattaatgttataaattctaatcnnnnnnnacaaag------aaaaagtaacc |
94 |
Q |
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| T |
31790178 |
atactcatttcttctacctcctgaaaatccaatccatttcaagaaaacattaatattataaattctaatctttttttacaaagaaaaagaaaaagtaacc |
31790277 |
T |
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| Q |
95 |
tgatttgtgcagatttaagaaagggatagttatattaatgtaaccaaaagataactaaatgaaggtttgcatcagtcactgttgtaatgtaaaccaaaaa |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31790278 |
tgatttgtgcagatttaagaaagggatagttatattaatgtaaccaaaagataactaattgaaggtttgcatcagtcactgttgtaatgtaaaccaaaaa |
31790377 |
T |
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| Q |
195 |
atgatagatgaaaatgagatattaataaaccttggaaaaaatg |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31790378 |
atgatagatgaaaatgagatattaataaaccttggaaaaaatg |
31790420 |
T |
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