View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13241_high_17 (Length: 239)
Name: NF13241_high_17
Description: NF13241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13241_high_17 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 32877593 - 32877369
Alignment:
| Q |
19 |
gccctttcttttctttttgttcgtggcattccgcttcacccaagaacggt----ttcctacattactgcactagtttctttgcacatatgcacagttgca |
114 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| ||| ||| | ||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
32877593 |
gccctttcttttatttttgttcgtggcattccgcttcacccaagaatggtcgatttcttgcattactgcactagtttgtttgcacatatgcacaattgca |
32877494 |
T |
|
| Q |
115 |
ttttcttagctggcgaaattttcatctcttgctcgtgtgtcaaaatttatggaatttatacaagtgttggcagatcttttggctttgcctcattatgctt |
214 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32877493 |
ttttcttagttgtcgaaattttcatctcttgctcgtgtgtcaaaatttatggaatttatacaagtgttggcagatcttttggctttgccccattatgctt |
32877394 |
T |
|
| Q |
215 |
tctttttgaacatgtatttgtggct |
239 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
32877393 |
tctttttgaacatgtatttgtggct |
32877369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 32880074 - 32880253
Alignment:
| Q |
19 |
gccctttcttttctttttgttcgtggcattccgcttcacccaagaacggt----ttcctacattactgcactagtttctttgcacatatgcacagttgca |
114 |
Q |
| |
|
|||||||||||| ||||||||| | |||||||||||||||| |||||| | || || ||||||||||| | | ||||||||||||| || ||||||| |
|
|
| T |
32880074 |
gccctttcttttatttttgttcctagcattccgcttcaccctagaacgatcgatttactgcattactgcacaaatgtctttgcacatattcagagttgca |
32880173 |
T |
|
| Q |
115 |
ttttcttagctggcgaaattttcatctcttgctcgtgtgtcaaaatttatggaatttatacaagtgttggcagatctttt |
194 |
Q |
| |
|
|||||| ||| | || |||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
32880174 |
ttttctctattggaggaactttcatatcttgctcgtgtgtcaaaatttatggaatttatacaagtgttggaagatatttt |
32880253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 32880347 - 32880397
Alignment:
| Q |
189 |
tcttttggctttgcctcattatgctttctttttgaacatgtatttgtggct |
239 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||| |||||||| || ||||| |
|
|
| T |
32880347 |
tcttttggttttgccccattatgctttctttttaaacatgtacttttggct |
32880397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 31760601 - 31760646
Alignment:
| Q |
189 |
tcttttggctttgcctcattatgctttctttttgaacatgtatttg |
234 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31760601 |
tcttttggctttgccccattatgctttctttttgaacatgtatttg |
31760646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 31760391 - 31760512
Alignment:
| Q |
79 |
actgcactagtttctttgcacatatgcacagttgca------ttttcttagctggcgaaattttcatctcttgctcgtgtgtcaaaatttatggaattta |
172 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||| |||||| |||| || ||||||||||| |||||||||||||||||| ||| | | |
|
|
| T |
31760391 |
actgcactagtttctttgcacatatacacaattgcaattgcattttctctattggcagaactttcatctctttctcgtgtgtcaaaatttacagaaataa |
31760490 |
T |
|
| Q |
173 |
tacaagtgttggcagatctttt |
194 |
Q |
| |
|
||||| |||||| |||| |||| |
|
|
| T |
31760491 |
tacaattgttggaagatatttt |
31760512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University