View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13241_high_3 (Length: 741)
Name: NF13241_high_3
Description: NF13241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13241_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 712; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 712; E-Value: 0
Query Start/End: Original strand, 1 - 724
Target Start/End: Complemental strand, 38488051 - 38487328
Alignment:
| Q |
1 |
tagacgagccatcgaaacaacaccatgccaaattatgcagcgctgcaaaactggtctaaatacttgagcaatcaataacataccccagcctgtgggaatg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38488051 |
tagacgagccatcgaaacaacaccatgccaaattatgcagcgctgcaaaactggcctaaatacttgagcaatcaataacataccccagcctgtgggaatg |
38487952 |
T |
|
| Q |
101 |
aatgctaacaaactagtaaaaaggtccatgaatttgaattgagtgaattccaacaaagcaagtatcacaaatatggcaaaaactatgacaagtgactgaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38487951 |
aatgctaacaaactagtaaaaaggtccatgaatttgaattgagtgaattccaacaaagcaagtatcacaaatatggcaaaaactatgacaagtgactgaa |
38487852 |
T |
|
| Q |
201 |
tcaatctgtaatagatgtgattttttgcatcatattcattccttgcatatgctaccaccacataaataccaaacacaacaacaacataaatccatgatag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38487851 |
tcaatctgtaatagatgtgattttttgcatcatattcattccttgcatatgctaccaccacataaataccaaacacgacaacaacataaatccatgatag |
38487752 |
T |
|
| Q |
301 |
caagtaaacaactatgctggtacttcctgcagctatgtcgagctggtagacaataccgtactggaagacgaagaaacggaggtctaaaattatctccata |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38487751 |
caagtaaacaactatgctggtacttcctgcagctatgccgagctggtagacaataccgtactggaagacgaagaaacggaggtctaaaattatctccata |
38487652 |
T |
|
| Q |
401 |
agctttccccaaaatcctgttccctttagatgatcttgctcttcgtaccaccacttttcccagctctcttcagctttagcaaacacacttccacggaacc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38487651 |
agctttccccaaaatcctgttccctttagatgatcttgctcttcgtaccaccacttttcccagctctcttcagctttagcaaacacacttccacggaacc |
38487552 |
T |
|
| Q |
501 |
aaatccagttgataaagtcttcaaaatcgtacacggtttttaaccagtcaaaaccagaaggattgaatacaaagggtgccataaaccatgatgcaaccaa |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38487551 |
aaatccagttgataaagtcttcaaaatcgtacacggtttttaaccagtcaaaaccagaaggattgaatacaaagggtgccataaaccatgatgcaaccaa |
38487452 |
T |
|
| Q |
601 |
aaaccaactagagatagtcatggctagataaacatatgttttagttgatacagcactgtgtgatgaataaattactaatattaaccccaactcaattgct |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38487451 |
aaaccaactagagatagtcatggctagataaacatatgttttagttgatacagcactgtgtgatgaataaattactaatattaaccccaactcaattgct |
38487352 |
T |
|
| Q |
701 |
ttcacaaaatggctacgagcatag |
724 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
38487351 |
ttcacaaaatggctacgagcatag |
38487328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 62 - 717
Target Start/End: Complemental strand, 30122389 - 30121734
Alignment:
| Q |
62 |
acttgagcaatcaataacataccccagcctgtgggaatgaatgctaacaaactagtaaaaaggtccatgaatttgaattgagtgaattccaacaaagcaa |
161 |
Q |
| |
|
||||| |||||||||| || ||||| |||||||||| |||||| ||||| |||||||||| |||| ||||||||||| |||||||||| |||||||| |
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| T |
30122389 |
acttgggcaatcaatagcaggccccatcctgtgggaaggaatgccaacaagctagtaaaaatatccacgaatttgaattctgtgaattccagcaaagcaa |
30122290 |
T |
|
| Q |
162 |
gtatcacaaatatggcaaaaactatgacaagtgactgaatcaatctgtaatagatgtgattttttgcatcatattcattccttgcatatgctaccaccac |
261 |
Q |
| |
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||||| || ||| |||| || ||||||||| |||||| | | ||||||||| || | ||| || ||||| |||| |||||| ||||||| | |
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| T |
30122289 |
ctatcagaagtattgcaagaattatgacaaggaactgaacaagccggtaatagatatgctctttcgccgaatatttgttccgtgcatacactaccacggc |
30122190 |
T |
|
| Q |
262 |
ataaataccaaacacaacaacaacataaatccatgatagcaagtaaacaactatgctggtacttcctgcagctatgtcgagctggtagacaataccgtac |
361 |
Q |
| |
|
|||||| ||| | |||||||||||||||||||||||||||||||| ||| | || || || |||| |||| || | || ||||| ||||| || ||| |
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| T |
30122189 |
ataaatcccagatacaacaacaacataaatccatgatagcaagtatacagcaatactattatttccagcagaaattccaagttggtaaacaattccatac |
30122090 |
T |
|
| Q |
362 |
tggaagacgaagaaacggaggtctaaaattatctccataagctttccccaaaatcctgttccctttagatgatcttgctcttcgtaccaccacttttccc |
461 |
Q |
| |
|
||||| | |||||| || |||||||| ||||| |||| |||||||||||||| || ||| ||||||||||||| |||||||| ||||||||| |||||| |
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|
| T |
30122089 |
tggaaaaagaagaagcgaaggtctaagattatttccaaaagctttccccaaaggccggttacctttagatgatcctgctcttcataccaccacctttccc |
30121990 |
T |
|
| Q |
462 |
agctctcttcagctttagcaaacacacttccacggaaccaaatccagttgataaagtcttcaaaatcgtacacggtttttaaccagtcaaaaccagaagg |
561 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| | ||||||||||||| |||||||| |||||||| || || ||||||||||| || || ||||| || |
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|
| T |
30121989 |
agctctgttcagctttggcaaacacacttccactgtaccaaatccagttcataaagtcatcaaaatcataaacagtttttaaccaatcgaagccagaggg |
30121890 |
T |
|
| Q |
562 |
attgaatacaaagggtgccataaaccatgatgcaaccaaaaaccaactagagatagtcatggctagataaacatatgttttagttgatacagcactgtgt |
661 |
Q |
| |
|
|||||| ||||| ||||||| | |||||||||||| || |||||||||| || |||| ||||| ||||||| |||| | |||| ||||| ||||||| |
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| T |
30121889 |
attgaacacaaacggtgccaccacccatgatgcaactaagaaccaactagtaatggtcagggctatataaacaaatgtgtccgttgctacaggactgtgt |
30121790 |
T |
|
| Q |
662 |
gatgaataaattactaatattaaccccaactcaattgctttcacaaaatggctacg |
717 |
Q |
| |
|
| || ||||||||| | ||||| |||||| ||||| |||||||||||||||||||| |
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|
| T |
30121789 |
gttgcataaattacaagtattagccccaattcaatagctttcacaaaatggctacg |
30121734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 434
Target Start/End: Original strand, 22218348 - 22218405
Alignment:
| Q |
377 |
cggaggtctaaaattatctccataagctttccccaaaatcctgttccctttagatgat |
434 |
Q |
| |
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|||||||||||||| |||| || ||||||||||||||| | ||| |||||||||||| |
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|
| T |
22218348 |
cggaggtctaaaatcatctgcacaagctttccccaaaacctggttacctttagatgat |
22218405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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