View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13241_high_5 (Length: 676)
Name: NF13241_high_5
Description: NF13241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13241_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 297 - 660
Target Start/End: Original strand, 47101826 - 47102189
Alignment:
| Q |
297 |
tgatgtgactaatgaaaaatatatgtaactagattagattggaatggaaagaaaagaaacttacaaaagtgggtgacgaatctctgaaacccaagaaccc |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47101826 |
tgatgtgactaatgaaaaatatatgtaactagattagattggaatggaaagaaaagaaacttacaaaagtgggtgacgaatctctgaaacccaagaaccc |
47101925 |
T |
|
| Q |
397 |
caatgtcgttgcctgacacctctgaacttctttgattgaaccatgattgcaaagtgggttgttgtgcactgcaaagagatatggaaggacaaagttcaga |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47101926 |
caatgtcgttgcctgacacctctgaacttctttgattgaaccatgattgcaaagtgggttgttgtgcactgcaaagagatatggaaggacaaagttcaga |
47102025 |
T |
|
| Q |
497 |
gggaacagaatagttagatataaagggacggaggcaagtgactgattaagtgtacgtacactgtcggcgatcgaactaaaagattaactcaaagtttagc |
596 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47102026 |
gggaacagaatagttagatataaagggatggaggcaagtgactgattaagtgtacgtacactgtcggcgatcgaactaaaagattaactcaaagtttagc |
47102125 |
T |
|
| Q |
597 |
cagtacaacaaactattaaacgttttcacctaaacaagtaccctatcaaataaatgttgtgctt |
660 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47102126 |
cagtacaacaaactattaaacgttttcacctaaacaagtaccctatcaaataaatgttgtgctt |
47102189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 47101497 - 47101779
Alignment:
| Q |
16 |
attaccaagaaaaactatatatttgtctataattctatccctaagtgctagggatcaatttccattcttttctcacttggatcctctagggttaggtttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47101497 |
attaccaagaaaaactatatatttgtctataattctatccctaagtgctagggatcaatttccattcttttc--acttggatcctctagggttaggtttt |
47101594 |
T |
|
| Q |
116 |
accttgcaacaagccgttcgattaatggatctctcttattataatgacatatacaaatagctatcatgccgccacaccatgaaagcacaccgtagagggt |
215 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
47101595 |
accttgcaacaagccgttagattaatggatctctcttaatataatgacatatacaaatagctatcatgccgccacaccatgaaagcacaccatagagggt |
47101694 |
T |
|
| Q |
216 |
ccattgaaggactatattatatatgtgcacatcattttgaatttgacaaaattaaccataattttcttgatttggacaaactgat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47101695 |
ccattgaaggactatattatatatgtgcacatcattttgaatttgacaaaattaaccataattttcttgatttggacaaactgat |
47101779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 370 - 433
Target Start/End: Original strand, 2429372 - 2429435
Alignment:
| Q |
370 |
tgacgaatctctgaaacccaagaaccccaatgtcgttgcctgacacctctgaacttctttgatt |
433 |
Q |
| |
|
||||||||||| || |||||||| |||||||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
2429372 |
tgacgaatctccgagacccaagagccccaatggcgttgcctaacacctctgaatttctttgatt |
2429435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 370 - 441
Target Start/End: Original strand, 44649210 - 44649281
Alignment:
| Q |
370 |
tgacgaatctctgaaacccaagaaccccaatgtcgttgcctgacacctctgaacttctttgattgaaccatg |
441 |
Q |
| |
|
||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
44649210 |
tgacgaatctcagagacccaagagccccaatggcgttgcctgacacctctgaacttctttgaatgtaccatg |
44649281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 430
Target Start/End: Complemental strand, 49532400 - 49532337
Alignment:
| Q |
367 |
gggtgacgaatctctgaaacccaagaaccccaatgtcgttgcctgacacctctgaacttctttg |
430 |
Q |
| |
|
||||| ||||| ||||| |||||||| ||||| || || |||||||| |||||||||||||||| |
|
|
| T |
49532400 |
gggtggcgaatttctgacacccaagagccccactggcgctgcctgactcctctgaacttctttg |
49532337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University