View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13241_high_6 (Length: 586)
Name: NF13241_high_6
Description: NF13241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13241_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 1 - 575
Target Start/End: Complemental strand, 7970405 - 7969831
Alignment:
| Q |
1 |
tttgaaaggagatttttccctttgtttcagagttctcgcagtgttttgcactgtttgttgttggtctctcaatcttggagcagtcactgctctcttgtag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7970405 |
tttgaaaggagatttttccctttgtttcagagttctcgcagtgttttgcactgtttgttgttggtctctcaatcttggagcagtcactgctctcttgtag |
7970306 |
T |
|
| Q |
101 |
tttgattttgtactcactctatccatttctagaagccctgaacttgctttcctattttcattataaggtgttctttgctcacggtttctgttataaggag |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7970305 |
tttgattttgtacccactctatccatttctagaagccctgaacttgctttcctattttcattataaggtgctctttgctcacggtttctgttataaggag |
7970206 |
T |
|
| Q |
201 |
acactgttcttccaatgtcaggccttggcaaaggactcatatttctacgtgagttcacacctgttatgtttgttaacgaagcatcatcatcattaccatc |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7970205 |
acaatgttcttccaatgtcaggccttggcaaaggactcatatttctacgtgagttcacacctgttatgtttgttaacgaagcatcatcatcattaccatc |
7970106 |
T |
|
| Q |
301 |
aacatcataatgattatcatgtgctacgcgtggcctatagggtgatttactgagatgtcttcttcttggttggttaagaactgaacctgttattgaaggt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7970105 |
aacatcataatgattatcatgtgctacgcgtggcctatagggtgatttactgagatgtcttcttcttggttggttaagaactgaacctgttattgaaggt |
7970006 |
T |
|
| Q |
401 |
gatgatgggacttcaaattcaaaccttgaagggtgtctcttgtggagtgtcataggacttttgttccttagatacaaagcttttgtttcttctggactca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7970005 |
gatgatgggacttcaaattcaaaccttgaagggtgtctcttgtggagtgtcataggacttttgttccttagatacaaagcttttgtttcttctggactca |
7969906 |
T |
|
| Q |
501 |
aagtcatgttgttctttcttcctcgttcatgacgtggagtgtcttgccactccgtctctgtgtctgatggttcat |
575 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7969905 |
aagtcatgttgttctttcttcctcgttcatgacgtggagtgtcttgccactccgtctctgtgtctgatggttcat |
7969831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University