View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13241_high_7 (Length: 576)
Name: NF13241_high_7
Description: NF13241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13241_high_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 8 - 576
Target Start/End: Original strand, 1231457 - 1232020
Alignment:
| Q |
8 |
aagaaaatacaaggaagatagtagcaggaaagaaagcaagcagaaaacaaattgaatggaaagaaaaagactagaaatttaattgatttattagttggtt |
107 |
Q |
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| T |
1231457 |
aagaaaatacaaggaagatagtagtaggaaagaaagcaagcagaaaacaaattgaatggaaagaaaaagactagaaatttaattgatttattagttggtt |
1231556 |
T |
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| Q |
108 |
tggtatcaataagatatcgaaaggaaagaaaaataaaattgttctcttctcttgtttgatgtaggatgaaaagtaggaggtcaaaaacaatattagtaca |
207 |
Q |
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| T |
1231557 |
tggtatcaataagatatcgaaaggaaagaaaaataaaattgttctcttctcttgtttgatgtaggatgaaaagtaggaggtcaaaaacaacattagtaca |
1231656 |
T |
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| Q |
208 |
acccacaatggatgcttattgaagagtgattatgaaaacttcacttctttgaggttctgagtttcttaaactgtgtatgagtataggggtgcaggattgt |
307 |
Q |
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| T |
1231657 |
acccacaatggatgcttattgaagagtgattatgaaaacttcacttctttgaggttcttagtttcttaaattgtgtatgagtataggggtgcaggattgt |
1231756 |
T |
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| Q |
308 |
gggtatgtatgtcatatgtgaaactccatcataggtgctcaagatgatatgtgaaaaataaaagatagaaaattatgtttttatttaagaatgaaataac |
407 |
Q |
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| T |
1231757 |
ggg-----------tatgtgaaactccatcataggtgctcaagatgatatgtgacaaataaaagatagaaaaatatttttttatttaagaatgaaataac |
1231845 |
T |
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| Q |
408 |
caagtattnnnnnnntaaaattaggtttgaagatttattcttgtaatttcttttagaatctctgcgtaaagttactctcttgattaatggaatgaatagt |
507 |
Q |
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| T |
1231846 |
gaagtattaaaaaaatagaattaggtttgaaaatttattcctgtaatttcttttggaatctctgcgtaaagttactctcttgattagtggaatggatagt |
1231945 |
T |
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| Q |
508 |
tgttctatcctctatagtaggtcttttttgac------ggataaagaatattgtgtgttgattctctactactct |
576 |
Q |
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| T |
1231946 |
tgttctatcctctatagtaggtcttttttgaccaaactggataaacaatattgtgtgttgattctctactgctct |
1232020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 426 - 493
Target Start/End: Original strand, 7313922 - 7313989
Alignment:
| Q |
426 |
aattaggtttgaagatttattcttgtaatttcttttagaatctctgcgtaaagttactctcttgatta |
493 |
Q |
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| T |
7313922 |
aattaggtatgaagatttattcttgtaatttcttttagaatctctctataaagttactctcttgatta |
7313989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 426 - 499
Target Start/End: Original strand, 7308753 - 7308826
Alignment:
| Q |
426 |
aattaggtttgaagatttattcttgtaatttcttttagaatctctgcgtaaagttactctcttgattaatggaa |
499 |
Q |
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| T |
7308753 |
aattaggtttgaagattggttcttgtaattccttttagaatctctttgtaaagttactcttttgattagtggaa |
7308826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 426 - 498
Target Start/End: Original strand, 7324988 - 7325060
Alignment:
| Q |
426 |
aattaggtttgaagatttattcttgtaatttcttttagaatctctgcgtaaagttactctcttgattaatgga |
498 |
Q |
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| T |
7324988 |
aattaggtttgaagaccgactcttgtaatttctattggaatctctgtgtaaagttactctattgattagtgga |
7325060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 493
Target Start/End: Complemental strand, 21334878 - 21334811
Alignment:
| Q |
426 |
aattaggtttgaagatttattcttgtaatttcttttagaatctctgcgtaaagttactctcttgatta |
493 |
Q |
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| T |
21334878 |
aattaggtttgaagactggttcttgtaattccttttggaatctttgtgtaaagttactctcttgatta |
21334811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 426 - 485
Target Start/End: Original strand, 24453994 - 24454053
Alignment:
| Q |
426 |
aattaggtttgaagatttattcttgtaatttcttttagaatctctgcgtaaagttactct |
485 |
Q |
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| T |
24453994 |
aattaggtttgaagatttattcttataattccttttgtaatctttgtgtaaagttactct |
24454053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 426 - 481
Target Start/End: Original strand, 36681694 - 36681749
Alignment:
| Q |
426 |
aattaggtttgaagatttattcttgtaatttcttttagaatctctgcgtaaagtta |
481 |
Q |
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| T |
36681694 |
aattatgtttgaagattgattcttgtaatttcttttggaatctttgtgtaaagtta |
36681749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 426 - 501
Target Start/End: Complemental strand, 7064800 - 7064726
Alignment:
| Q |
426 |
aattaggtttgaagatttattcttgtaatttcttttagaatctctgcgtaaagttactctcttgattaatggaatg |
501 |
Q |
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| T |
7064800 |
aattatgtttggagattaattcttataatt-cttttggaatctttgtgtaaagatactctcttgattaatggaatg |
7064726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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