View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13241_low_1 (Length: 751)
Name: NF13241_low_1
Description: NF13241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13241_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 519; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 162 - 733
Target Start/End: Original strand, 41074813 - 41075388
Alignment:
| Q |
162 |
tttatgtcattgaaagttttctgctctggaatactgctgtgttttgtgccatgttgctgattttgtaaacgggcagttcctagttgatataccttcgagg |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41074813 |
tttatgtcattgaaagttttctgctctggaatactgctgtgttttgtgccatgttgctgattttgtaaacaggcagttcctagttgatataccttcgagg |
41074912 |
T |
|
| Q |
262 |
atcaggactctggaagttaatatggtgatggtattctctgaggtgcttgcagtagggtacatattctgatttgccagtagtgttgacacagtttagtagt |
361 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41074913 |
atcaggactctggaagttaatatggtgatagtattctctgaggtgcttgcagtagggtacatattctgatttgccagtagtgttgacacagtttagtagt |
41075012 |
T |
|
| Q |
362 |
agtttgaatgcaaatacttggagtgattggtgtgctggtgaagagtgctcattgtagtatgaattatattcaacgagagcttgtatgcttggattatttg |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41075013 |
agtttgaatgcaaatacttggagtgattggtgtgctggtgaagagtgctcattgtagtatgaattatatttaacgagagcttgtatgcttggattatttg |
41075112 |
T |
|
| Q |
462 |
gtggtttttaagcatgtctgcgttactactttcaaggagtaacaaaggttattggtaccatgaaggcaaatttgattggtatccggttattgagtggttg |
561 |
Q |
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||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41075113 |
gtgatttttaagtatgtctgtgttactactttcaaggagtaacaaaggttattggtaccataaaggcaaatttgattggtatccggttattgagtggttg |
41075212 |
T |
|
| Q |
562 |
ttttttggagtatacatgagtgaggtacctattcctttgaattcacgatggaggtgatgctagtgtatcagagttctcctggttccttttggactatctt |
661 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41075213 |
ttttttggagtatacatgagtgaggtacctattcctttgaattcacgatggaggtgatgctagtgtatcagagttctcctgattccttttggactatctt |
41075312 |
T |
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| Q |
662 |
aagggtctggtctaagtggt----ggaatacttatgtgtgtattttgtttagatggggtgctagcctgtgtttctt |
733 |
Q |
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||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41075313 |
aagtgtctggtctaagtggtgaaaggaatacttatgtgtgtattttgtttagatggggtgttagcctgtgtttctt |
41075388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 740
Target Start/End: Original strand, 41086137 - 41086876
Alignment:
| Q |
1 |
acctgttcttctggttgatcagaatttatctgtatgaaaggtgagaaactgttttgtacctctggtgtgtcaga--tcatttatgac------atggttt |
92 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| |||||||||| | | |||||||| | ||||||| |
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| T |
41086137 |
acctgttcttctggttgatcagaatttatctgtgtgaaaggtgtgacactgttttgta--tctggtgtgttataaatcatttatagctctttgatggttt |
41086234 |
T |
|
| Q |
93 |
tggctggaaatagcagaatgtttgttgtcactaaactgaaacaa---tgatgattgtggatctaatggtgagtttatgtcattgaaagttttctgctctg |
189 |
Q |
| |
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|||||||||||| |||||| |||||||| |||||||||||||| ||||||||| |||||||||| |||||||||||||| ||| || |||||||||| |
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| T |
41086235 |
tggctggaaataa-agaatgattgttgtcgctaaactgaaacaaatttgatgattgcggatctaatgctgagtttatgtcatggaatgtgttctgctctg |
41086333 |
T |
|
| Q |
190 |
gaatactgctgtgttttgtgccatgttgctgattttgtaaacgggcagttcctagttgatataccttcgaggatcaggactctggaagttaatatggtga |
289 |
Q |
| |
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|| |||| ||||| ||||||||||||||||||||||||| || ||||| |||||||||||||| |||||| ||||||||| |||||||||||||| |
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| T |
41086334 |
gagcactgttgtgtcctgtgccatgttgctgattttgtaaattggatgttcccagttgatataccttggaggattgggactctggtagttaatatggtga |
41086433 |
T |
|
| Q |
290 |
tggtattctctgaggtgcttgcagtagggtacatattctgatttgccagtagtgttgacacagtttagtagtagtttgaatgcaaatacttggagtgatt |
389 |
Q |
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| ||||||||||||||||||||||||| |||||| |||||||||||||||| |||| |||||||| ||||| |||||||||||||||||||| ||||||| |
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| T |
41086434 |
tagtattctctgaggtgcttgcagtagagtacatgttctgatttgccagtattgttaacacagttcagtagcagtttgaatgcaaatacttgaagtgatt |
41086533 |
T |
|
| Q |
390 |
ggtgtgctggtgaagagtgctcattgtagtatgaattatattcaacgagagcttgtatgcttggattatttggtggtttttaagcatgtctgcgttacta |
489 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||| ||| |||| |||||||||||||||||||||| ||||||||| |||| |||||| |
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| T |
41086534 |
ggtgtgctggtgaagagtgctcattgtattatgtattatatttaaccagagtttgtatgcttggattatttggtagtttttaagtatgt-----ttacta |
41086628 |
T |
|
| Q |
490 |
ctttcaaggagtaacaaaggttattggtaccatgaaggcaaatttgattggtatccggttattgagtggttgttttttggagtatacatgagtgaggtac |
589 |
Q |
| |
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|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
41086629 |
ctttcaaggagt-acaaagg---atggtaccatgaaggcaaatttgattggtatccggttattgattggttgtttttttgagtatacatgagtgaggtac |
41086724 |
T |
|
| Q |
590 |
ctattcctttgaattcacgatggaggtgatgctagtgtatcagagttctcctggttcc-ttttggactatcttaagggtctggtctaagtggtggaatac |
688 |
Q |
| |
|
|||||||| |||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||| ||| ||||||||||| |
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| T |
41086725 |
ctattcctctgaattcataatggaggtgttgctagtgtattagagttctcctggttcctttttggactattgtaagggtctggtgtaaatggtggaatac |
41086824 |
T |
|
| Q |
689 |
ttatgtgtgtattttgtttagatggggtgctagcctgtgtttcttgatgata |
740 |
Q |
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| |||||||||||||||||| |||||||||||||||| |||||| |||||| |
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| T |
41086825 |
tgatgtgtgtattttgtttacttggggtgctagcctgtttttctttatgata |
41086876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 41074736 - 41074818
Alignment:
| Q |
1 |
acctgttcttctggttgatcagaatttatctgtatgaaaggtgagaaactgttttgtacctctggtgtgtcagatcatttatg |
83 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41074736 |
acctgttcttctggttgatcagaatttatctgtatgaaaggtgagaaactgttttgtacctctggtgtgtcagatcatttatg |
41074818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 4e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 450 - 706
Target Start/End: Original strand, 48297170 - 48297424
Alignment:
| Q |
450 |
ttggattatttggtggtttttaagcatgtctgcgttactactttcaaggagtaacaaaggttattggtaccatgaaggcaaatttgattggtatccggtt |
549 |
Q |
| |
|
|||||||||||||||||||||||| |||| | ||| |||||||||||||| |||||||||| |||| | |||| ||||||||||||||||| || |
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| T |
48297170 |
ttggattatttggtggtttttaagtatgtttatgtttctactttcaaggagcaacaaaggtt---ggtatccgaaaggaaaatttgattggtatcctatt |
48297266 |
T |
|
| Q |
550 |
attgagtggttgttttttggagtatacatgagtgaggtacctattcctttgaattcacgatggaggtgatgctagtgtatcagagttctcctggttcctt |
649 |
Q |
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||||| ||| ||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
48297267 |
attgattggctgttttttggagtatacatgattgaggtacctattcctatgaattcatgatggaggtgatgctagtgtattagagttctcctagttcctt |
48297366 |
T |
|
| Q |
650 |
-ttggactatcttaagggtctggtctaagtggtggaatacttatgtgtgtattttgtt |
706 |
Q |
| |
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||||| ||| ||||||||| || |||| |||||||||||||||||||||||||||| |
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| T |
48297367 |
cctggaccatcgtaagggtctagtgtaagcggtggaatacttatgtgtgtattttgtt |
48297424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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