View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13241_low_12 (Length: 441)

Name: NF13241_low_12
Description: NF13241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13241_low_12
NF13241_low_12
[»] scaffold0003 (3 HSPs)
scaffold0003 (19-431)||(103412-103824)
scaffold0003 (272-431)||(88277-88436)
scaffold0003 (256-407)||(108298-108449)
[»] chr7 (18 HSPs)
chr7 (82-242)||(28770471-28770631)
chr7 (102-228)||(43234804-43234929)
chr7 (82-231)||(39320945-39321094)
chr7 (64-228)||(44537317-44537481)
chr7 (109-228)||(28663105-28663224)
chr7 (86-228)||(21727372-21727514)
chr7 (82-226)||(27123268-27123412)
chr7 (102-227)||(35923474-35923595)
chr7 (102-232)||(3692891-3693022)
chr7 (81-235)||(35496532-35496686)
chr7 (145-228)||(14651356-14651439)
chr7 (102-200)||(7653590-7653688)
chr7 (102-200)||(26239535-26239633)
chr7 (102-167)||(44592880-44592945)
chr7 (138-237)||(9718952-9719050)
chr7 (138-233)||(22688914-22689007)
chr7 (105-227)||(42936024-42936142)
chr7 (154-203)||(43224078-43224127)
[»] chr4 (36 HSPs)
chr4 (83-233)||(7852505-7852655)
chr4 (59-227)||(41462020-41462187)
chr4 (84-202)||(35777691-35777809)
chr4 (83-233)||(51834909-51835059)
chr4 (82-200)||(8297865-8297983)
chr4 (102-200)||(47995731-47995829)
chr4 (102-228)||(50341833-50341959)
chr4 (57-228)||(7444351-7444523)
chr4 (81-186)||(27953049-27953153)
chr4 (88-200)||(50426989-50427101)
chr4 (113-230)||(40291339-40291456)
chr4 (102-227)||(53014173-53014298)
chr4 (82-228)||(31174617-31174763)
chr4 (109-204)||(31429298-31429393)
chr4 (57-200)||(49400582-49400724)
chr4 (83-228)||(37383718-37383865)
chr4 (57-228)||(37138128-37138298)
chr4 (138-228)||(8261158-8261248)
chr4 (138-228)||(8274575-8274665)
chr4 (102-200)||(34391701-34391799)
chr4 (102-186)||(49084408-49084493)
chr4 (138-229)||(31690432-31690522)
chr4 (64-176)||(20394614-20394725)
chr4 (102-200)||(24229640-24229738)
chr4 (102-228)||(37440840-37440966)
chr4 (102-200)||(42222969-42223067)
chr4 (159-228)||(23605633-23605702)
chr4 (138-237)||(13585219-13585317)
chr4 (132-228)||(36702828-36702920)
chr4 (57-200)||(45900143-45900286)
chr4 (193-224)||(56299386-56299417)
chr4 (102-167)||(51736368-51736433)
chr4 (171-227)||(9913053-9913109)
chr4 (83-175)||(12618713-12618805)
chr4 (102-170)||(23689896-23689964)
chr4 (102-186)||(25115272-25115355)
[»] chr3 (11 HSPs)
chr3 (102-228)||(35177782-35177908)
chr3 (104-231)||(29083862-29083990)
chr3 (102-200)||(51351291-51351389)
chr3 (102-175)||(47040048-47040121)
chr3 (102-228)||(12086729-12086855)
chr3 (110-199)||(47638917-47639006)
chr3 (82-176)||(42846023-42846118)
chr3 (83-228)||(48180137-48180282)
chr3 (102-176)||(49362372-49362446)
chr3 (102-167)||(52249340-52249405)
chr3 (109-200)||(26900017-26900109)
[»] chr5 (21 HSPs)
chr5 (82-228)||(16667258-16667404)
chr5 (84-228)||(18229568-18229712)
chr5 (102-200)||(9276574-9276672)
chr5 (102-227)||(8221136-8221261)
chr5 (57-197)||(30501137-30501277)
chr5 (57-197)||(30541480-30541620)
chr5 (80-200)||(13480010-13480131)
chr5 (84-237)||(2918553-2918707)
chr5 (102-228)||(39558733-39558859)
chr5 (83-200)||(34899130-34899247)
chr5 (83-184)||(40530445-40530546)
chr5 (82-228)||(30104798-30104944)
chr5 (83-227)||(5815038-5815182)
chr5 (83-198)||(7719199-7719314)
chr5 (102-200)||(17692276-17692374)
chr5 (145-200)||(7968447-7968502)
chr5 (102-199)||(3140828-3140925)
chr5 (57-170)||(8208148-8208261)
chr5 (164-228)||(23117193-23117257)
chr5 (83-233)||(41583538-41583687)
chr5 (109-157)||(22873492-22873540)
[»] chr2 (19 HSPs)
chr2 (103-237)||(31452304-31452437)
chr2 (82-227)||(1334851-1334996)
chr2 (102-227)||(31017275-31017400)
chr2 (82-200)||(9448948-9449065)
chr2 (102-204)||(19890179-19890281)
chr2 (82-227)||(34904755-34904900)
chr2 (57-186)||(4762318-4762447)
chr2 (102-228)||(37993092-37993218)
chr2 (87-199)||(38533864-38533975)
chr2 (102-227)||(41933145-41933270)
chr2 (83-227)||(15505539-15505683)
chr2 (83-199)||(38533341-38533456)
chr2 (105-197)||(5524478-5524570)
chr2 (106-200)||(29239243-29239336)
chr2 (102-176)||(43228843-43228917)
chr2 (102-167)||(14295642-14295707)
chr2 (109-226)||(19514892-19515008)
chr2 (112-152)||(15080558-15080598)
chr2 (138-227)||(40347915-40348003)
[»] scaffold0036 (1 HSPs)
scaffold0036 (84-229)||(62490-62635)
[»] chr8 (29 HSPs)
chr8 (89-228)||(1135162-1135301)
chr8 (102-228)||(4384102-4384227)
chr8 (57-200)||(2258085-2258228)
chr8 (102-200)||(27801220-27801318)
chr8 (82-228)||(42636332-42636478)
chr8 (108-176)||(3520826-3520894)
chr8 (102-198)||(35901945-35902041)
chr8 (83-198)||(12684490-12684605)
chr8 (84-227)||(12954724-12954867)
chr8 (102-228)||(37427202-37427330)
chr8 (83-176)||(28207619-28207712)
chr8 (83-198)||(12829867-12829982)
chr8 (89-200)||(3146037-3146152)
chr8 (82-170)||(37813426-37813515)
chr8 (102-205)||(884430-884533)
chr8 (132-176)||(41567993-41568037)
chr8 (83-182)||(167856-167955)
chr8 (57-164)||(16723225-16723332)
chr8 (145-228)||(26750607-26750690)
chr8 (81-200)||(33949544-33949663)
chr8 (194-232)||(1576325-1576363)
chr8 (102-227)||(9735272-9735396)
chr8 (84-230)||(33013041-33013186)
chr8 (84-186)||(36355965-36356062)
chr8 (89-154)||(2888760-2888825)
chr8 (102-163)||(9024502-9024563)
chr8 (102-175)||(24695761-24695834)
chr8 (171-227)||(23984336-23984392)
chr8 (160-228)||(45197449-45197517)
[»] chr6 (15 HSPs)
chr6 (102-227)||(17215650-17215775)
chr6 (64-227)||(28874375-28874538)
chr6 (108-228)||(32823697-32823817)
chr6 (132-227)||(30801785-30801880)
chr6 (102-228)||(30739613-30739739)
chr6 (82-176)||(1840977-1841071)
chr6 (102-200)||(7421686-7421784)
chr6 (132-228)||(31855098-31855194)
chr6 (102-229)||(23399124-23399251)
chr6 (102-229)||(24103744-24103870)
chr6 (83-182)||(26669291-26669390)
chr6 (83-200)||(9762798-9762915)
chr6 (102-227)||(27778768-27778891)
chr6 (82-170)||(3766271-3766359)
chr6 (84-175)||(9301904-9301996)
[»] scaffold0419 (1 HSPs)
scaffold0419 (64-227)||(1041-1204)
[»] chr1 (24 HSPs)
chr1 (83-200)||(47187815-47187932)
chr1 (102-200)||(18432947-18433045)
chr1 (83-228)||(2864138-2864281)
chr1 (102-228)||(3982279-3982404)
chr1 (132-237)||(45640591-45640695)
chr1 (84-200)||(38748715-38748831)
chr1 (82-228)||(43396981-43397129)
chr1 (84-196)||(48022351-48022463)
chr1 (84-228)||(8794412-8794557)
chr1 (102-228)||(44329610-44329736)
chr1 (83-228)||(34232677-34232818)
chr1 (108-200)||(44329484-44329576)
chr1 (102-168)||(26811258-26811324)
chr1 (82-200)||(39150576-39150694)
chr1 (84-228)||(34409730-34409873)
chr1 (102-202)||(8365517-8365617)
chr1 (57-225)||(39156230-39156402)
chr1 (88-175)||(44829272-44829359)
chr1 (84-186)||(40460731-40460833)
chr1 (83-198)||(42791138-42791253)
chr1 (102-176)||(17552847-17552921)
chr1 (102-228)||(30822743-30822868)
chr1 (139-200)||(31889213-31889275)
chr1 (102-176)||(38491235-38491309)
[»] scaffold0004 (1 HSPs)
scaffold0004 (102-179)||(335863-335940)
[»] scaffold0268 (1 HSPs)
scaffold0268 (112-229)||(20214-20330)
[»] scaffold0119 (1 HSPs)
scaffold0119 (83-182)||(1403-1502)


Alignment Details
Target: scaffold0003 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 431
Target Start/End: Complemental strand, 103824 - 103412
Alignment:
Q  19 aatacttactacataatgttttatctaaattaatttacggtcttcttaacgagtgttcctaaagcactctttaagcatctctgatttagtaattattctt 118  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||  ||||||||||||||||| |||||||||||||||||||    
T  103824 aatacttactacataatgttttatctacattaatttacggtcttcttaactagtgtttctatggcactctttaagcatctttgatttagtaattattctt 103725  T
Q  119 ttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaatgttccgaagacactcg 218  Q
    ||||||| | |||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| || || | | |||||      
T  103724 ttaaaaagtcgaatattacaatttttaatgcattcaatatacaatttttcattaaaaatttattattttaaatgcttaaagagtgctctggaaacactaa 103625  T
Q  219 ttaacatttctcattaatttataccannnnnnnnattacagcggagtttattgactgcttacaacattctgattgtgaagcatatgggtgtgaattacct 318  Q
    |||||||||| |||||||||||||||        ||||||||||||| ||  |||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  103624 ttaacatttcccattaatttataccattttttttattacagcggagtataccgactgcttgcaacattctgattgtcaagcatatgcgtgtgaattacct 103525  T
Q  319 tataaaccaggttgttttatggtggagtatgctccccaattctttcgtctcgcttgtggctgtgtttaagcaatgtgaccgtaagttttcactaaaaaat 418  Q
    | |||||||| |||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  103524 tttaaaccagattgtcttatggtggaatatgctccccagttctttcgtcttgcttgtggctgtgtttgagcaatgtgacagtaagttttcactaaaaaat 103425  T
Q  419 tccacgacctatg 431  Q
    |||||||||||||    
T  103424 tccacgacctatg 103412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 272 - 431
Target Start/End: Complemental strand, 88436 - 88277
Alignment:
Q  272 actgcttacaacattctgattgtgaagcatatgggtgtgaattaccttataaaccaggttgttttatggtggagtatgctccccaattctttcgtctcgc 371  Q
    ||||||||||||||||||||||| |||||||||  ||||||||||| | |||||||| |||| |||||||||| ||| ||||||||||| ||  ||||      
T  88436 actgcttacaacattctgattgtcaagcatatgaatgtgaattaccatttaaaccagattgtcttatggtggaatattctccccaattcgttgctctccg 88337  T
Q  372 ttgtggctgtgtttaagcaatgtgaccgtaagttttcactaaaaaattccacgacctatg 431  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  88336 ttgtggctgtgtttgagaaatgtgaccgtaagttttcactaaaaaattccacgacctatg 88277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 407
Target Start/End: Complemental strand, 108449 - 108298
Alignment:
Q  256 acagcggagtttattgactgcttacaacattctgattgtgaagcatatgggtgtgaattaccttataaaccaggttgttttatggtggagtatgctcccc 355  Q
    |||| ||||| || || ||||| || ||||||||||||| ||||||||| |||| ||||||||  ||||||||  ||| || || |||| |||| |||||    
T  108449 acagaggagtatactgtctgctcactacattctgattgtaaagcatatgtgtgtcaattacctcttaaaccagagtgtattctgctggaatatgttcccc 108350  T
Q  356 aattctttcgtctcgcttgtggctgtgtttaagcaatgtgaccgtaagtttt 407  Q
    | |||| ||||||| ||||| | ||||||| ||||||||||| |||||||||    
T  108349 atttctatcgtctcacttgtagttgtgtttgagcaatgtgactgtaagtttt 108298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 82 - 242
Target Start/End: Original strand, 28770471 - 28770631
Alignment:
Q  82 gcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttac 181  Q
    |||||||||||||||| |  | ||||||||||||||||| |||| |  | ||||| |||||  ||||||||||||| |||||||||||||||||| ||||    
T  28770471 gcactctttaagcatcccaaaattagtaattattcttttgaaaagtcaactattacaatttccaatgcattcaatacacaacttttcattaaaaacttac 28770570  T
Q  182 tattttaaatgcttaaagaatgttccgaagacactcgttaacatttctcattaatttatac 242  Q
    |||||  | |||||||||| ||||||| || |||||||||||||||| | ||| |||||||    
T  28770571 tatttagagtgcttaaagagtgttccggaggcactcgttaacatttccctttattttatac 28770631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 102 - 228
Target Start/End: Original strand, 43234804 - 43234929
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaa 201  Q
    ||||||||||||||||||||||||||  | ||||| |||||  | | ||||||||| | |||||||||||||||||||||||||| || ||||||||||     
T  43234804 atttagtaattattcttttaaaaaataaactattacaatttccattacattcaatacataacttttcattaaaaatttactatttaaagtgcttaaagag 43234903  T
Q  202 tgttccgaagacactcgttaacatttc 228  Q
    ||  |||| | ||||||||||||||||    
T  43234904 tg-cccgagggcactcgttaacatttc 43234929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 82 - 231
Target Start/End: Complemental strand, 39321094 - 39320945
Alignment:
Q  82 gcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttac 181  Q
    |||||||||||||||  |  |||||  ||||||||||||||||| |  | ||||| |||||| |||| |||||||| ||||||||| || ||||| ||||    
T  39321094 gcactctttaagcataccaaatttaacaattattcttttaaaaagtcaactattacaattttcaatgtattcaatacacaacttttaataaaaaacttac 39320995  T
Q  182 tattttaaatgcttaaagaatgttccgaagacactcgttaacatttctca 231  Q
    || || || |||||||||| |||  | |||||||||||||||||||||||    
T  39320994 taattaaagtgcttaaagagtgtctcaaagacactcgttaacatttctca 39320945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 64 - 228
Target Start/End: Original strand, 44537317 - 44537481
Alignment:
Q  64 ttaacgagtgttcctaaagcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaac 163  Q
    ||||||||||  ||| | |||||||||||||||| |  |||||||||||||||||||||||| |  | |||||||||||  | || ||  |||| | |||    
T  44537317 ttaacgagtgcccctgatgcactctttaagcatcccatatttagtaattattcttttaaaaagtcaactattataatttccattgtatataatacataac 44537416  T
Q  164 ttttcattaaaaatttactattttaaatgcttaaagaatgttccgaagacactcgttaacatttc 228  Q
    ||||||||||||| ||||||||| || |||||||||| ||  |||  | ||||||||||||||||    
T  44537417 ttttcattaaaaacttactatttaaagtgcttaaagagtgccccgggggcactcgttaacatttc 44537481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 28663224 - 28663105
Alignment:
Q  109 aattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaatgttccg 208  Q
    ||||||||||||||||| |  | ||||| |||||| ||||||||||||| |||| ||||||||||||  ||||||||| || |||||||||| ||  |||    
T  28663224 aattattcttttaaaaagtcaactattacaattttcaatgcattcaatacacaatttttcattaaaaccttactatttaaagtgcttaaagagtgccccg 28663125  T
Q  209 aagacactcgttaacatttc 228  Q
     || || |||||||||||||    
T  28663124 gaggcattcgttaacatttc 28663105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 86 - 228
Target Start/End: Complemental strand, 21727514 - 21727372
Alignment:
Q  86 tctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactatt 185  Q
    ||||||||||||||  |||||||||||||||||||||||| |  | ||||| |||||  ||| ||||||||| |||| | || |||||||| |||  |||    
T  21727514 tctttaagcatctccaatttagtaattattcttttaaaaagtcaactattacaatttccaatacattcaatacacaaatatttattaaaaacttatcatt 21727415  T
Q  186 ttaaatgcttaaagaatgttccgaagacactcgttaacatttc 228  Q
    | || |||||||||| ||  || ||| ||||||||||||||||    
T  21727414 tgaagtgcttaaagagtgccccaaaggcactcgttaacatttc 21727372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 226
Target Start/End: Original strand, 27123268 - 27123412
Alignment:
Q  82 gcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttac 181  Q
    |||||||||||||||| |  |||||||||| ||||||||||||| |  | ||||| |||||  |||||||| | || |||||||||| ||||||| ||||    
T  27123268 gcactctttaagcatcccaaatttagtaatcattcttttaaaaagtcaactattacaatttccaatgcattaagtacacaacttttcgttaaaaacttac 27123367  T
Q  182 tattttaaatgcttaaagaatgttccgaagacactcgttaacatt 226  Q
     |||| || |||||||||| ||  |||  | ||||||||||||||    
T  27123368 catttaaagtgcttaaagagtgccccgggggcactcgttaacatt 27123412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 227
Target Start/End: Complemental strand, 35923595 - 35923474
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaa 201  Q
    ||||||| ||||||||||| ||||||  | ||||| |||||  |||||||||||||    |||||||| |||||| ||| ||||| || || |||||||     
T  35923595 atttagtcattattctttttaaaaataaactattacaatttccaatgcattcaata----acttttcaataaaaacttattatttaaagtgtttaaagag 35923500  T
Q  202 tgttccgaagacactcgttaacattt 227  Q
    ||||||| ||||||||||||||||||    
T  35923499 tgttccggagacactcgttaacattt 35923474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 102 - 232
Target Start/End: Original strand, 3692891 - 3693022
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcat-taaaaatttactattttaaatgcttaaaga 200  Q
    |||||| |||||||||||||||||||  | ||||| |||||  |||||| |||||| |||| |||||||  ||||| |||||| || |||| ||||||||    
T  3692891 atttagcaattattcttttaaaaaatcaactattacaatttccaatgcactcaatacacaatttttcataaaaaaacttactaattaaaatacttaaaga 3692990  T
Q  201 atgttccgaagacactcgttaacatttctcat 232  Q
     ||  ||| | |||||||||||||||||||||    
T  3692991 gtgccccggaaacactcgttaacatttctcat 3693022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 81 - 235
Target Start/End: Complemental strand, 35496686 - 35496532
Alignment:
Q  81 agcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaattta 180  Q
    |||||||||||||||||    ||||||||| |||  ||||||||| |  | ||||| |||||| |||||||||| || |||| ||||||||||||| |||    
T  35496686 agcactctttaagcatccaaaatttagtaactatatttttaaaaagtcaactattacaattttcaatgcattcattacacaatttttcattaaaaactta 35496587  T
Q  181 ctattttaaatgcttaaagaatgttccgaagacactcgttaacatttctcattaa 235  Q
    | |||| || || ||||||| ||  |||  | |||||||||||||||| ||||||    
T  35496586 ccatttaaagtgtttaaagagtgccccgggggcactcgttaacatttcccattaa 35496532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 14651439 - 14651356
Alignment:
Q  145 aatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaatgttccgaagacactcgttaacatttc 228  Q
    |||||| ||| || ||||||||||||||||||  ||||||||||| |||||||||| ||  |||| | ||||||||||||||||    
T  14651439 aatgcaatcattacacaacttttcattaaaaacctactattttaagtgcttaaagagtgccccgagggcactcgttaacatttc 14651356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 7653590 - 7653688
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaaga 200  Q
    |||||| || |||||||||||||| |  | |||||||||||  ||| |||||| || |||||||||||||||||| ||||| ||| || ||||||||||    
T  7653590 atttagcaactattcttttaaaaagtcaactattataatttccaattcattcattacacaacttttcattaaaaacttactttttaaagtgcttaaaga 7653688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 26239633 - 26239535
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaaga 200  Q
    |||||| ||||||||||| ||||| || |   ||||| |||  |||||||| ||||||||| ||||||||||||| ||||||||| || || |||||||    
T  26239633 atttagcaattattctttcaaaaagttaacgtttatagtttccaatgcattgaatatacaatttttcattaaaaacttactatttaaagtgtttaaaga 26239535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 44592880 - 44592945
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaactttt 167  Q
    ||||| |||||||||||||||||| || | ||||| |||||| |||| |||||||| |||||||||    
T  44592880 atttaataattattcttttaaaaagttaactattacaattttcaatgtattcaatacacaactttt 44592945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 9719050 - 9718952
Alignment:
Q  138 aatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaatgttccgaagacactcgttaacatttctcattaatt 237  Q
    |||||| |||| ||||| || | ||||||||||  |||| |||| |||| || |||||||||| ||| | || |||||||||||||||||| ||||||||    
T  9719050 aattttcaatgtattcattacataacttttcatataaaacttaccatttaaagtgcttaaagagtgt-ctgaggacactcgttaacatttcccattaatt 9718952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 22689007 - 22688914
Alignment:
Q  138 aatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaatgttccgaagacactcgttaacatttctcatt 233  Q
    ||||||||||||||| |||| |||| || ||| |||||| ||||||||||| || |||||||||| ||   | |||||| ||||||||||||||||    
T  22689007 aatttttaatgcattaaatacacaagttgtca-taaaaaattactattttagattcttaaagaatatt-ataggacacttgttaacatttctcatt 22688914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 42936024 - 42936142
Alignment:
Q  105 tagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaatgt 204  Q
    |||||||||||||||||||||||  | ||||| || ||| |||||||| |||| |||| |||||||| |||| || |||||| || ||  |||||||||     
T  42936024 tagtaattattcttttaaaaaatcaactattacaa-tttcaatgcatttaatacacaatttttcatt-aaaacttgctatttaaagtgtataaagaatgc 42936121  T
Q  205 tccgaagacactcgttaacattt 227  Q
     ||||  ||||||||||||||||    
T  42936122 cccga--acactcgttaacattt 42936142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 43224127 - 43224078
Alignment:
Q  154 aatatacaacttttcattaaaaatttactattttaaatgcttaaagaatg 203  Q
    |||| |||||||||||||||||| || |||||| || |||||||||||||    
T  43224127 aatacacaacttttcattaaaaacttgctatttaaagtgcttaaagaatg 43224078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 83 - 233
Target Start/End: Complemental strand, 7852655 - 7852505
Alignment:
Q  83 cactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttact 182  Q
    |||||||||||||||    ||||||||||||||||||||||||||| | ||||| |||||| |||||||| |||| |||||||||||||||||| |||||    
T  7852655 cactctttaagcatcctaaatttagtaattattcttttaaaaaattaactattacaattttcaatgcatttaatacacaacttttcattaaaaacttact 7852556  T
Q  183 attttaaatgcttaaagaatgttccgaagacactcgttaacatttctcatt 233  Q
    |||| || |||||||||| ||  |||  | |||||||||| ||||| ||||    
T  7852555 atttaaagtgcttaaagagtgccccggtggcactcgttaatatttcccatt 7852505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 59 - 227
Target Start/End: Original strand, 41462020 - 41462187
Alignment:
Q  59 tcttcttaacgagtgttcctaaagcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatat 158  Q
    |||| ||||||||||| |||  |||||||||||||||| |   |||||||||||||||||||||||| |  | ||||| ||||| | ||||||| ||||     
T  41462020 tcttgttaacgagtgtccctggagcactctttaagcattttatatttagtaattattcttttaaaaagtcaactattacaatttcttatgcatttaatac 41462119  T
Q  159 acaacttttcattaaaaatttactattttaaatgcttaaagaatgttccgaagacactcgttaacattt 227  Q
    | || ||||||||||||| ||||||||| ||||||||||||| || | ||||| |||||||||||||||    
T  41462120 ataatttttcattaaaaacttactatttaaaatgcttaaagagtgct-cgaaggcactcgttaacattt 41462187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 84 - 202
Target Start/End: Complemental strand, 35777809 - 35777691
Alignment:
Q  84 actctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttacta 183  Q
    ||||||||| |||| |  |||||||||||||||||||||||| || | ||||| ||||| |||||||||||||| |||||||||||||||||| |||| |    
T  35777809 actctttaaccatcccaaatttagtaattattcttttaaaaagttaactattacaatttctaatgcattcaatacacaacttttcattaaaaacttacca 35777710  T
Q  184 ttttaaatgcttaaagaat 202  Q
    ||| || ||||||||||||    
T  35777709 tttaaagtgcttaaagaat 35777691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 83 - 233
Target Start/End: Original strand, 51834909 - 51835059
Alignment:
Q  83 cactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttact 182  Q
    |||||||||||||||    |||||| ||||||||||||||||| |  | |||||||||||  |||||||| |||| ||||||||||||||||||||||||    
T  51834909 cactctttaagcatcctaaatttagcaattattcttttaaaaagtcaactattataatttccaatgcattaaatacacaacttttcattaaaaatttact 51835008  T
Q  183 attttaaatgcttaaagaatgttccgaagacactcgttaacatttctcatt 233  Q
    |||| || || ||||||| |||  ||   ||||||||||||||||| ||||    
T  51835009 atttaaagtgtttaaagagtgtctcgggaacactcgttaacatttcgcatt 51835059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 8297865 - 8297983
Alignment:
Q  82 gcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttac 181  Q
    |||||||||||||||| |  |||||||||||||||||||||||  |  | | ||| |||||  ||||||||||||| |||| ||||||||||||| ||||    
T  8297865 gcactctttaagcatcccaaatttagtaattattcttttaaaatgtcaactgttacaatttccaatgcattcaatacacaatttttcattaaaaacttac 8297964  T
Q  182 tattttaaatgcttaaaga 200  Q
    ||||| || ||||||||||    
T  8297965 tatttaaagtgcttaaaga 8297983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 47995829 - 47995731
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaaga 200  Q
    |||||||||||| ||||||||||| || | ||||| |||||| ||||||||||||| | |||||||||||||||| |||| |||| || ||||||||||    
T  47995829 atttagtaattactcttttaaaaagttaattattacaattttcaatgcattcaatacataacttttcattaaaaacttacaatttaaagtgcttaaaga 47995731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 102 - 228
Target Start/End: Complemental strand, 50341959 - 50341833
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaa 201  Q
    |||||||||||||||||||||||| |  | ||||| |||||  || |||||||||| ||||||||||||| |||||||||||| | || ||||||||||     
T  50341959 atttagtaattattcttttaaaaagtcaactattacaatttccaacgcattcaatacacaacttttcatttaaaatttactatataaagtgcttaaagag 50341860  T
Q  202 tgttccgaagacactcgttaacatttc 228  Q
    |   ||||| ||||| |||||||||||    
T  50341859 taccccgaaaacacttgttaacatttc 50341833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 228
Target Start/End: Complemental strand, 7444523 - 7444351
Alignment:
Q  57 ggtcttcttaacgagtgttcctaaagcactctttaagcatctctgatttagtaattattcttttaaaaaattgaa-tattataatttttaatgcattcaa 155  Q
    |||||| |||||||||| |||  |  |||| |||||||||| |  ||||||||||||| ||||||||||| | || ||||| |||||| |||||||||||    
T  7444523 ggtcttgttaacgagtgctcccgatacactttttaagcatcccaaatttagtaattatacttttaaaaaagtcaactattacaattttcaatgcattcaa 7444424  T
Q  156 tatacaacttttcattaaaaatttactattttaaatgcttaaagaatgt-tccgaagacactcgttaacatttc 228  Q
    || |||||||||| ||||||| ||| ||||| || || ||||||| ||| || | || ||||||||||||||||    
T  7444423 tacacaacttttctttaaaaacttagtatttaaagtgtttaaagagtgtctcgggag-cactcgttaacatttc 7444351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 27953153 - 27953049
Alignment:
Q  81 agcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaattta 180  Q
    |||||||||||||||||||  |||||||| ||||| ||||||||| || | ||||| |||||| ||||||||||||| |||||||||| ||||||| |||    
T  27953153 agcactctttaagcatctcaaatttagta-ttattattttaaaaagttaactattacaattttcaatgcattcaatacacaacttttcgttaaaaactta 27953055  T
Q  181 ctattt 186  Q
    | ||||    
T  27953054 ccattt 27953049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 50426989 - 50427101
Alignment:
Q  88 tttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactatttt 187  Q
    ||||||||||||  ||||||||||||||||||| |||| |  | ||||| |||||  |||||| |||| | ||||||||||||||||||||||||||||     
T  50426989 tttaagcatctcaaatttagtaattattcttttgaaaagtcaactattacaatttccaatgcaatcaacacacaacttttcattaaaaatttactattta 50427088  T
Q  188 aaatgcttaaaga 200  Q
    || || |||||||    
T  50427089 aagtgtttaaaga 50427101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 230
Target Start/End: Complemental strand, 40291456 - 40291339
Alignment:
Q  113 attcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaatgttccgaaga 212  Q
    |||||||||||||||| | ||||||||||||||||| ||| |||| |||| |||| ||||||||||||   ||| |||  |||||||||| || || ||     
T  40291456 attcttttaaaaaattaattattataatttttaatgtattgaatacacaattttttattaaaaatttatcgtttcaaacacttaaagaatatttcggagg 40291357  T
Q  213 cactcgttaacatttctc 230  Q
    || |||||||||||||||    
T  40291356 cattcgttaacatttctc 40291339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 102 - 227
Target Start/End: Complemental strand, 53014298 - 53014173
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaa 201  Q
    |||||||||||||  |||||||||||| | ||||| |||||  ||| ||||||||| ||||||||| ||||||||  ||| |||| || ||||||| |||    
T  53014298 atttagtaattatctttttaaaaaattaactattacaatttccaatacattcaatacacaactttttattaaaaacataccatttaaagtgcttaacgaa 53014199  T
Q  202 tgttccgaagacactcgttaacattt 227  Q
    | | |||||| ||||| |||||||||    
T  53014198 tttcccgaaggcactcattaacattt 53014173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 82 - 228
Target Start/End: Complemental strand, 31174763 - 31174617
Alignment:
Q  82 gcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttac 181  Q
    |||||||||||||||||   |||| ||||||||||||||||||| || | | ||| |||||| |||  ||||| || ||||||||||||||||||||||     
T  31174763 gcactctttaagcatctaaaattttgtaattattcttttaaaaagttaactgttacaattttcaatatattcattacacaacttttcattaaaaatttat 31174664  T
Q  182 tattttaaatgcttaaagaatgttcc-gaagacactcgttaacatttc 228  Q
     |||| || |  ||||||||| | || |||| ||||||||||||||||    
T  31174663 catttaaagtatttaaagaatatcccagaag-cactcgttaacatttc 31174617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 31429298 - 31429393
Alignment:
Q  109 aattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaatgt 204  Q
    |||||||||||||||||||  | ||||| |||||  ||||||||||||| ||||||||||||| |||| |||||| || || |||||||| |||||    
T  31429298 aattattcttttaaaaaatcaactattacaatttccaatgcattcaatacacaacttttcatttaaaacttactaattaaagtgcttaaaaaatgt 31429393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 57 - 200
Target Start/End: Original strand, 49400582 - 49400724
Alignment:
Q  57 ggtcttcttaacgagtgttcctaaagcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaat 156  Q
    |||||| |||||||||| ||| | |||||| ||||||||||    ||||||||||||||||||||||||||  | ||||| |||||  |||| ||| |||    
T  49400582 ggtcttgttaacgagtgctcc-agagcactatttaagcatcctaaatttagtaattattcttttaaaaaatcaactattacaatttccaatgtatttaat 49400680  T
Q  157 atacaacttttcattaaaaatttactattttaaatgcttaaaga 200  Q
    | || |||||||||||||| |||  ||||| || ||||||||||    
T  49400681 acacgacttttcattaaaattttgttatttaaagtgcttaaaga 49400724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 228
Target Start/End: Complemental strand, 37383865 - 37383718
Alignment:
Q  83 cactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttac- 181  Q
    |||||||||||||||    |||||||||||||||||| |||||||  |   |||||| ||  ||||||||||||||||||||||| |||||||||||||     
T  37383865 cactctttaagcatccaaaatttagtaattattcttt-aaaaaatcaaccgttataacttccaatgcattcaatatacaactttttattaaaaatttacc 37383767  T
Q  182 ---tattttaaatgcttaaagaatgttccgaagacactcgttaacatttc 228  Q
        |||| ||| ||||||| ||| | ||||| |||||||||||||||||    
T  37383766 actcatttaaaaggcttaaaaaatatcccgaa-acactcgttaacatttc 37383718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 228
Target Start/End: Complemental strand, 37138298 - 37138128
Alignment:
Q  57 ggtcttcttaacgagtgttcctaaagcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaat 156  Q
    |||||| ||||||||||||| |   |||||||||||| |  ||  |||||| || |||||||||||||| |  | |||||||||||  |||||| |||||    
T  37138298 ggtcttgttaacgagtgttc-tggggcactctttaaggaaatcaaatttagcaactattcttttaaaaagtcaactattataatttccaatgcactcaat 37138200  T
Q  157 atacaacttttcattaaaaatttactattttaaatgcttaaagaatgttccgaagacactcgttaacatttc 228  Q
    | |||||||||||| || || || ||| || || |||||||||| ||| ||| |  ||||||||||||||||    
T  37138199 acacaacttttcataaagaactttctaattaaattgcttaaagagtgtcccggaagcactcgttaacatttc 37138128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 8261158 - 8261248
Alignment:
Q  138 aatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaatgttccgaagacactcgttaacatttc 228  Q
    |||||| |||||||| |||| | |||||||||||||||| ||||||||| || ||||| |||| ||  ||  |||||||||||||||||||    
T  8261158 aattttcaatgcatttaatacataacttttcattaaaaacttactatttaaagtgcttgaagagtgccccagagacactcgttaacatttc 8261248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 138 - 228
Target Start/End: Original strand, 8274575 - 8274665
Alignment:
Q  138 aatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaatgttccgaagacactcgttaacatttc 228  Q
    |||||| |||||||| |||| | |||||||||||||||| ||||||||| || ||||| |||| ||  ||  |||||||||||||||||||    
T  8274575 aattttcaatgcatttaatacataacttttcattaaaaacttactatttaaagtgcttgaagagtgccccagagacactcgttaacatttc 8274665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 34391799 - 34391701
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaaga 200  Q
    |||||||||||||||||||| ||| |    ||||| |||||  |||||| |||||| ||||||||| |||||||| |||||||||||| || |||||||    
T  34391799 atttagtaattattcttttataaagtcagttattacaatttccaatgcaatcaatacacaactttttattaaaaacttactattttaagtgtttaaaga 34391701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 49084493 - 49084408
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgca-ttcaatatacaacttttcattaaaaatttactattt 186  Q
    |||||||||||||||||||||||| |  | ||||| |||||| |||| | ||||||| |||||||||||||||||| |||| ||||    
T  49084493 atttagtaattattcttttaaaaagtcaactattacaattttcaatgaaattcaatacacaacttttcattaaaaacttaccattt 49084408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 31690432 - 31690522
Alignment:
Q  138 aatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaatgttccgaagacactcgttaacatttct 229  Q
    |||||| |||||||| |||| |||||||||||| | ||||||||||||| || || |||| || || ||||| | |||||||||||||||||    
T  31690432 aattttcaatgcattgaatacacaacttttcataagaaatttactatttaaagtgtttaaggagtg-tccgagggcactcgttaacatttct 31690522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 20394614 - 20394725
Alignment:
Q  64 ttaacgagtgttcctaaagcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaac 163  Q
    |||||||||||  | | ||||||||||||||||| |  |||||||||||||||||||||||| |  | ||||| |||||  ||| ||||||  |||||||    
T  20394614 ttaacgagtgtctccagagcactctttaagcatcccaaatttagtaattattcttttaaaaagtgaactattacaatttccaatacattca--atacaac 20394711  T
Q  164 -ttttcattaaaaa 176  Q
     |||||||||||||    
T  20394712 attttcattaaaaa 20394725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 24229738 - 24229640
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaaga 200  Q
    ||||||||||||||||||| |||| |  | ||| | |||||| |||||||| |||| |||| ||||||||||||| ||  ||||| || ||||||||||    
T  24229738 atttagtaattattctttttaaaagtaaattatcacaattttcaatgcatttaatacacaatttttcattaaaaactttttatttaaagtgcttaaaga 24229640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 228
Target Start/End: Original strand, 37440840 - 37440966
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaa 201  Q
    |||||||||||||| ||||||||| |  | ||||| |||||| ||||  ||||||| | || ||||||||| |||||||| |||| || | ||||||||     
T  37440840 atttagtaattattattttaaaaagtcaactattacaattttcaatgtgttcaatacataatttttcattataaatttaccatttaaagtacttaaagag 37440939  T
Q  202 tgttccgaagacactcgttaacatttc 228  Q
    |||  | | | ||||||||||||||||    
T  37440940 tgtctcaagggcactcgttaacatttc 37440966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 42222969 - 42223067
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaaga 200  Q
    ||||||||| ||||  |||||||||   | |||||||||||| ||||||||||||| |||| |||| |||||||| |||| | ||||| | ||||||||    
T  42222969 atttagtaactatttatttaaaaaaccaactattataattttcaatgcattcaatacacaattttttattaaaaacttaccactttaagtacttaaaga 42223067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 23605702 - 23605633
Alignment:
Q  159 acaacttttcattaaaaatttactattttaaatgcttaaagaatgttccgaagacactcgttaacatttc 228  Q
    |||||||||||||||||| |||| |||| || |||||||| | | | ||| |||||||||||||||||||    
T  23605702 acaacttttcattaaaaacttaccatttaaagtgcttaaaaagtatcccggagacactcgttaacatttc 23605633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 13585317 - 13585219
Alignment:
Q  138 aatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaatgttccgaagacactcgttaacatttctcattaatt 237  Q
    |||||| |||| ||||| || | ||||||||||  |||| |||| |||| || |||||||||| ||| | || |||||||||||||||||| ||||||||    
T  13585317 aattttcaatgtattcattacataacttttcatataaaacttaccatttaaagtgcttaaagagtgt-ctgaggacactcgttaacatttcccattaatt 13585219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 228
Target Start/End: Original strand, 36702828 - 36702920
Alignment:
Q  132 tattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaatgttccgaagacactcgttaacatttc 228  Q
    ||||| |||||| ||||||||||||| |||| ||||||||||||| |||    || || |||||||||| ||| ||| ||  |||||||||||||||    
T  36702828 tattacaattttcaatgcattcaatacacaatttttcattaaaaactta----ttaaagtgcttaaagagtgtcccggaggaactcgttaacatttc 36702920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 200
Target Start/End: Complemental strand, 45900286 - 45900143
Alignment:
Q  57 ggtcttcttaacgagtgttcctaaagcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaat 156  Q
    |||||| ||||||||||  ||  | ||||||||||||||||    |||||| ||||||||||||| ||| |  | ||| | |||||  ||||||||||||    
T  45900286 ggtcttgttaacgagtgcccccgaggcactctttaagcatcctaaatttagcaattattcttttataaagtcaactatcacaatttccaatgcattcaat 45900187  T
Q  157 atacaacttttcattaaaaatttactattttaaatgcttaaaga 200  Q
    | ||||||||||||   ||| |||||| || || ||||||||||    
T  45900186 acacaacttttcatatgaaacttactaattaaagtgcttaaaga 45900143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 224
Target Start/End: Original strand, 56299386 - 56299417
Alignment:
Q  193 cttaaagaatgttccgaagacactcgttaaca 224  Q
    ||||||||||||||||||||||||||||||||    
T  56299386 cttaaagaatgttccgaagacactcgttaaca 56299417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 51736368 - 51736433
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaactttt 167  Q
    |||||| ||||||||||||||||| |  | |||||||||||| ||| |||| |||| |||||||||    
T  51736368 atttagcaattattcttttaaaaagtcaactattataattttcaatacattgaatacacaactttt 51736433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 9913053 - 9913109
Alignment:
Q  171 taaaaatttactattttaaatgcttaaagaatgttccgaagacactcgttaacattt 227  Q
    ||||| ||||| | |||||||||||||||| |||| |||||| |||||||| |||||    
T  9913053 taaaattttaccactttaaatgcttaaagagtgtttcgaagatactcgttagcattt 9913109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 12618805 - 12618713
Alignment:
Q  83 cactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaa 175  Q
    ||||||||||||||  |  |||||| ||||||| ||||||||| |  ||| |||||| ||| |||||||| | ||||||| ||||||| ||||    
T  12618805 cactctttaagcattccaaatttagaaattatttttttaaaaagtcaaatgttataaatttcaatgcattgattatacaaattttcataaaaa 12618713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 23689896 - 23689964
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcat 170  Q
    ||||||||||||||||||||||||||  | || || ||||||||||  ||| |||| ||||| ||||||    
T  23689896 atttagtaattattcttttaaaaaatcaactaatacaatttttaatttattgaatacacaacatttcat 23689964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 25115355 - 25115272
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattt 186  Q
    |||||||||||||| ||||||||| || | ||||| |||||  |||||| | |||| ||||||||| | |||||| |||||||||    
T  25115355 atttagtaattattattttaaaaagttaactattacaatttccaatgcagtgaatacacaacttttta-taaaaacttactattt 25115272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 102 - 228
Target Start/End: Complemental strand, 35177908 - 35177782
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaa 201  Q
    ||||| |||||||||||||||||| || ||||||||||| || |||||||| | ||||||| ||||  |||||||||||||||||||| ||||||| |||    
T  35177908 atttaataattattcttttaaaaagttaaatattataatattcaatgcatttagtatacaattttttcttaaaaatttactattttaagtgcttaacgaa 35177809  T
Q  202 tgttccgaagacactcgttaacatttc 228  Q
    || | |||| |||||||||||||||||    
T  35177808 tgcttcgaaaacactcgttaacatttc 35177782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 104 - 231
Target Start/End: Complemental strand, 29083990 - 29083862
Alignment:
Q  104 ttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaa-tgcttaaagaat 202  Q
    |||||||||||||||||||||| || | ||||| ||||||||||||||| |||| ||||||||||| |||||| ||||||||||||| |||||||||| |    
T  29083990 ttagtaattattcttttaaaaagttaactattacaatttttaatgcatttaatacacaacttttcaataaaaacttactattttaaagtgcttaaagagt 29083891  T
Q  203 gttccgaagacactcgttaacatttctca 231  Q
     | | | || |||||||||||||||||||    
T  29083890 atcctggaggcactcgttaacatttctca 29083862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 51351291 - 51351389
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaaga 200  Q
    ||||| |||||||||||||||||| || | |||||||||||  ||| |||| |||| |||| ||||||||||||| ||||| ||| || ||||||||||    
T  51351291 atttaataattattcttttaaaaagtttagtattataatttccaatacatttaatacacaatttttcattaaaaacttactttttaaagtgcttaaaga 51351389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 47040121 - 47040048
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaa 175  Q
    ||||| ||||||  ||||||||||||| | ||||||||||||||||||||| | ||||||||||||||| ||||    
T  47040121 atttaataattaaacttttaaaaaatttattattataatttttaatgcatttagtatacaacttttcataaaaa 47040048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 102 - 228
Target Start/End: Complemental strand, 12086855 - 12086729
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaa 201  Q
    ||||||||||||||||||| ||||      |||||||||||| | ||||||||||| |||  ||||||||||||| |||||||||  | | |||||| |     
T  12086855 atttagtaattattctttttaaaagacatctattataattttcagtgcattcaatacacattttttcattaaaaacttactatttcgagtacttaaatag 12086756  T
Q  202 tgttccgaagacactcgttaacatttc 228  Q
    ||| |||| | ||||||||||||||||    
T  12086755 tgtcccgagggcactcgttaacatttc 12086729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 47638917 - 47639006
Alignment:
Q  110 attattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaag 199  Q
    ||||| |||||||||| || | ||||| ||||||||||||| |||||| |||| ||||||| || || |||||| || ||||||||||||    
T  47638917 attatgcttttaaaaagttaactattacaatttttaatgcactcaatacacaatttttcataaagaacttactaattaaaatgcttaaag 47639006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 42846118 - 42846023
Alignment:
Q  82 gcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaat-gcattcaatatacaacttttcattaaaaa 176  Q
    ||||||||||||||||    |||||||||||||||||| ||||| |  | ||||  |||||| ||| |||||||||| ||||||||||||||||||    
T  42846118 gcactctttaagcatcctaaatttagtaattattctttgaaaaagtcaactatttcaattttcaattgcattcaatacacaacttttcattaaaaa 42846023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 228
Target Start/End: Complemental strand, 48180282 - 48180137
Alignment:
Q  83 cactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttact 182  Q
    ||||||||||||||| |  |||||  ||||||||||||||||| |  | ||||| |||||  ||||||||   ||  |||| |||||| ||||| |||||    
T  48180282 cactctttaagcatccccaatttaacaattattcttttaaaaagtcaactattacaatttccaatgcattggttacccaacatttcataaaaaacttact 48180183  T
Q  183 attttaaatgcttaaagaatgttccgaagacactcgttaacatttc 228  Q
    |||| || || | ||||| ||||||| ||| | |||||||||||||    
T  48180182 atttaaagtgataaaagagtgttccggagatattcgttaacatttc 48180137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 49362446 - 49362372
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaa 176  Q
    ||||| |||||||||||||||||| || | ||||| |||||  |||| ||| ||||||||| |||| ||||||||    
T  49362446 atttaataattattcttttaaaaagttaactattacaatttccaatgtatttaatatacaattttttattaaaaa 49362372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 52249340 - 52249405
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaactttt 167  Q
    ||||| |||||||||||||||||| || | ||||| ||| | ||||  ||||||||||||||||||    
T  52249340 atttaataattattcttttaaaaagttaactattacaatctctaatatattcaatatacaactttt 52249405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 200
Target Start/End: Complemental strand, 26900109 - 26900017
Alignment:
Q  109 aattattcttttaaaaaattgaa-tattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaaga 200  Q
    |||||||||||||||||| | || ||||| |||||| |||||||| | || | ||||||||||  ||||||||| |||| || || |||||||    
T  26900109 aattattcttttaaaaaagtcaactattacaattttcaatgcatttattacataacttttcatataaaatttaccatttaaagtgtttaaaga 26900017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 82 - 228
Target Start/End: Complemental strand, 16667404 - 16667258
Alignment:
Q  82 gcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttac 181  Q
    |||||||||||||||| |  ||||| |||||||||||||||||| |  | ||||| |||||  ||| ||||||||| |||| ||||||||||||| ||||    
T  16667404 gcactctttaagcatcacaaatttaataattattcttttaaaaagtcaattattacaatttccaatacattcaatacacaatttttcattaaaaacttac 16667305  T
Q  182 tattttaaatgcttaaagaatgttccgaagacactcgttaacatttc 228  Q
    ||||| || |||||||| | ||||| | |||||||||||||||||||    
T  16667304 tatttaaagtgcttaaaaagtgttctggagacactcgttaacatttc 16667258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 18229712 - 18229568
Alignment:
Q  84 actctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttacta 183  Q
    |||||||||||||| |  |||||||||||||||||||||||| || | ||||| |||||  ||| ||||||||| |||| ||||||||||||| |||| |    
T  18229712 actctttaagcatcccaaatttagtaattattcttttaaaaagttaactattacaatttccaatacattcaataaacaatttttcattaaaaacttacca 18229613  T
Q  184 ttttaaatgcttaaagaatgttccgaagacactcgttaacatttc 228  Q
    ||| || |||||||||| ||| ||| |  ||||||||||||||||    
T  18229612 tttaaagtgcttaaagagtgtcccggaagcactcgttaacatttc 18229568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 9276672 - 9276574
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaaga 200  Q
    |||||||||||||| |||||||||||  | |||||||||||| ||||||||||||| | |||||||||||||||| ||||||||| || ||||||||||    
T  9276672 atttagtaattatttttttaaaaaatcaactattataattttcaatgcattcaatacataacttttcattaaaaacttactatttaaagtgcttaaaga 9276574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 102 - 227
Target Start/End: Original strand, 8221136 - 8221261
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaa 201  Q
    |||||| ||||||||| ||||||| |  | ||||| || ||| ||||||||||||| |||| |||| |||||||| ||||||||| ||||||||||||||    
T  8221136 atttagcaattattctcttaaaaagtcaactattacaactttcaatgcattcaatacacaattttttattaaaaacttactatttaaaatgcttaaagaa 8221235  T
Q  202 tgttccgaagacactcgttaacattt 227  Q
    || |||| |||||||| |||||||||    
T  8221236 tgctccggagacactcattaacattt 8221261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 57 - 197
Target Start/End: Complemental strand, 30501277 - 30501137
Alignment:
Q  57 ggtcttcttaacgagtgttcctaaagcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaat 156  Q
    |||||| ||||||||||  || |  |||||||||||||||| |  |||||||||||||||||||||||| |  | ||||| |||||  ||| ||||||||    
T  30501277 ggtcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaattattcttttaaaaagtcaattattacaatttccaatacattcaat 30501178  T
Q  157 atacaacttttcattaaaaatttactattttaaatgcttaa 197  Q
    | ||||||||||||| |||| ||||||||| || |||||||    
T  30501177 acacaacttttcatttaaaacttactatttaaagtgcttaa 30501137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 57 - 197
Target Start/End: Complemental strand, 30541620 - 30541480
Alignment:
Q  57 ggtcttcttaacgagtgttcctaaagcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaat 156  Q
    |||||| ||||||||||  || |  |||||||||||||||| |  |||||||||||||||||||||||| |  | ||||| |||||  ||| ||||||||    
T  30541620 ggtcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaattattcttttaaaaagtcaattattacaatttccaatacattcaat 30541521  T
Q  157 atacaacttttcattaaaaatttactattttaaatgcttaa 197  Q
    | ||||||||||||| |||| ||||||||| || |||||||    
T  30541520 acacaacttttcatttaaaacttactatttaaagtgcttaa 30541480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 200
Target Start/End: Original strand, 13480010 - 13480131
Alignment:
Q  80 aagcactctttaagcatctctgatttagtaattattcttttaaaaaattgaa-tattataatttttaatgcattcaatatacaacttttcattaaaaatt 178  Q
    ||||||||||||||||| ||  |||||||||||||| ||| |||||| | || |||||||||||| ||||||||||||| ||||  ||| ||||||||||    
T  13480010 aagcactctttaagcatttcaaatttagtaattattttttaaaaaaaattaactattataattttcaatgcattcaatacacaatattttattaaaaatt 13480109  T
Q  179 tactattttaaatgcttaaaga 200  Q
    || ||||| || || |||||||    
T  13480110 tattatttaaagtggttaaaga 13480131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 84 - 237
Target Start/End: Complemental strand, 2918707 - 2918553
Alignment:
Q  84 actctttaagcatctctgatttagtaattattcttttaaaaaattgaa-tattataatttttaatgcattcaatatacaacttttcattaaaaa-tttac 181  Q
    ||||||||||||| ||  ||||| |||||||| |||||||||  | || |||||||||||  |||||||| |||| |||||||||||||||||| |||||    
T  2918707 actctttaagcatttcaaatttaataattatt-ttttaaaaatgtcaactattataatttccaatgcatttaatacacaacttttcattaaaaattttac 2918609  T
Q  182 tattttaaatgcttaaagaatgttccgaagacactcgttaacatttctcattaatt 237  Q
     |||| ||||||||||||| ||  |  | || |||||||||||||| |||||||||    
T  2918608 aatttaaaatgcttaaagagtgccctaaggatactcgttaacatttttcattaatt 2918553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 228
Target Start/End: Complemental strand, 39558859 - 39558733
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaa 201  Q
    ||||||||||||||| |||||||| |  | | ||| |||||  ||||||||  ||| || |||||||| |||||| ||||||||| ||||||||||  |     
T  39558859 atttagtaattattcatttaaaaattcaactgttacaatttccaatgcatttgatacacgacttttcaataaaaacttactatttaaaatgcttaagaag 39558760  T
Q  202 tgttccgaagacactcgttaacatttc 228  Q
    || ||||||||||||||||||||||||    
T  39558759 tgctccgaagacactcgttaacatttc 39558733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 34899247 - 34899130
Alignment:
Q  83 cactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttact 182  Q
    ||||||||||||||| |  || |||||||||||||||||||||    | ||||| ||||| ||||||||| |||||| ||||||||||| |||| |||||    
T  34899247 cactctttaagcatcccaaatatagtaattattcttttaaaaagacaattattacaatttctaatgcatttaatatataacttttcatttaaaacttact 34899148  T
Q  183 attttaaatgcttaaaga 200  Q
    |||| || || |||||||    
T  34899147 atttaaagtgtttaaaga 34899130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 83 - 184
Target Start/End: Complemental strand, 40530546 - 40530445
Alignment:
Q  83 cactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttact 182  Q
    |||||||||| ||||||  |||||||||||||| ||||||||| || | ||| | ||||| |||| ||||||||| |||||| ||||||||||| |||||    
T  40530546 cactctttaaacatctcatatttagtaattattattttaaaaagttaactatcacaatttctaattcattcaatacacaactattcattaaaaacttact 40530447  T
Q  183 at 184  Q
    ||    
T  40530446 at 40530445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 228
Target Start/End: Original strand, 30104798 - 30104944
Alignment:
Q  82 gcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttac 181  Q
    |||||||||||||||| |  ||||||||| |||| ||||||||| |  |  |||| |||||  ||||||||||||| |||||||||||||||||| ||||    
T  30104798 gcactctttaagcatcccaaatttagtaactatttttttaaaaagtcaacaattacaatttccaatgcattcaatacacaacttttcattaaaaacttac 30104897  T
Q  182 tattttaaatgcttaaagaatgttccgaagacactcgttaacatttc 228  Q
     | || || || ||||||| || ||||  | |||| |||||||||||    
T  30104898 cacttaaagtgtttaaagagtgctccgggggcactagttaacatttc 30104944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 227
Target Start/End: Complemental strand, 5815182 - 5815038
Alignment:
Q  83 cactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttact 182  Q
    ||||||||||||| ||   ||||||||||||||| |||||||| || | ||  | |||||  ||| ||||||| ||||| |||||||||||||| |||||    
T  5815182 cactctttaagcaccttaaatttagtaattattcatttaaaaatttaactaccacaatttccaatacattcaacatacatcttttcattaaaaacttact 5815083  T
Q  183 attttaaatgcttaaagaatgttccgaagacactcgttaacattt 227  Q
      ||||| |||||||||| ||  || ||  |||||||||||||||    
T  5815082 gctttaagtgcttaaagagtgccccaaaagcactcgttaacattt 5815038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 7719199 - 7719314
Alignment:
Q  83 cactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttact 182  Q
    ||||||||||||||  |  |||||  |||||||||||||||||||  | ||||| |||||  |||  |||||||| |||||||||||||||||| ||| |    
T  7719199 cactctttaagcataccatatttaaaaattattcttttaaaaaatcaactattacaatttccaatatattcaatacacaacttttcattaaaaacttatt 7719298  T
Q  183 attttaaatgcttaaa 198  Q
    |||| || ||||||||    
T  7719299 atttaaagtgcttaaa 7719314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 17692276 - 17692374
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaaga 200  Q
    |||||||||||||||| ||||||| |  | | ||| |||||| |||||| | | || ||||||||||||||||||  ||||||||||| ||||||||||    
T  17692276 atttagtaattattctcttaaaaagtcaactgttacaattttcaatgcaattactacacaacttttcattaaaaacctactattttaagtgcttaaaga 17692374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 7968447 - 7968502
Alignment:
Q  145 aatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaaga 200  Q
    |||||||| |||| |||||||||||||||||| ||||||||| || ||||||||||    
T  7968447 aatgcatttaatacacaacttttcattaaaaacttactatttaaagtgcttaaaga 7968502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 199
Target Start/End: Original strand, 3140828 - 3140925
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaag 199  Q
    ||||| |||||||||||||||||| |  | ||||| |||||| ||| |||| |||||||||||||| ||| |||| ||| ||||| || || ||||||    
T  3140828 atttaataattattcttttaaaaagtcaactattacaattttcaattcatttaatatacaactttttatttaaaacttattatttaaagtgtttaaag 3140925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 170
Target Start/End: Original strand, 8208148 - 8208261
Alignment:
Q  57 ggtcttcttaacgagtgttcctaaagcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaat 156  Q
    |||||| ||||||||||||   | |||||||||||||||| |   ||||   ||||||||||||||||| |  | ||||| ||||||||||||||||| |    
T  8208148 ggtcttgttaacgagtgttttcagagcactctttaagcattttaaatttgaaaattattcttttaaaaagtcaattattacaatttttaatgcattcatt 8208247  T
Q  157 atacaacttttcat 170  Q
    | | ||||||||||    
T  8208248 acataacttttcat 8208261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 23117257 - 23117193
Alignment:
Q  164 ttttcattaaaaatttactattttaaatgcttaaagaatgttccgaagacactcgttaacatttc 228  Q
    ||||||||||||| ||||||||| ||||| |||||||||| |||  ||||||| ||||| |||||    
T  23117257 ttttcattaaaaacttactatttaaaatgattaaagaatgctccagagacactagttaatatttc 23117193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 233
Target Start/End: Original strand, 41583538 - 41583687
Alignment:
Q  83 cactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttact 182  Q
    ||||||||||| ||| |  |||||| |||||||| || ||||| || ||||||| || ||  |||||||| |||| |||  |||||| ||||||||||||    
T  41583538 cactctttaaggatcccaaatttagaaattattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttca-taaaaatttact 41583636  T
Q  183 attttaaatgcttaaagaatgttccgaagacactcgttaacatttctcatt 233  Q
    |||  | || |||||||||||  |||  || |||||||| ||||| |||||    
T  41583637 attgaagattcttaaagaatgccccgcggatactcgttagcatttatcatt 41583687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 22873492 - 22873540
Alignment:
Q  109 aattattcttttaaaaaattgaatattataatttttaatgcattcaata 157  Q
    ||||||||||| ||||| || |||||| |||||||||||||||| ||||    
T  22873492 aattattctttaaaaaagttaaatattttaatttttaatgcattgaata 22873540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 31452437 - 31452304
Alignment:
Q  103 tttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaat 202  Q
    ||||||||||||||||||||||| |  |  |||| |||||| ||||||||||||| ||||||||| |||||||| ||||||||| || |||||||| |||    
T  31452437 tttagtaattattcttttaaaaagtcaacaattacaattttcaatgcattcaatacacaactttt-attaaaaacttactatttaaagtgcttaaataat 31452339  T
Q  203 gttccgaagacactcgttaacatttctcattaatt 237  Q
    ||||||   ||||||||||||||||||||| ||||    
T  31452338 gttccgggaacactcgttaacatttctcataaatt 31452304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 82 - 227
Target Start/End: Complemental strand, 1334996 - 1334851
Alignment:
Q  82 gcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttac 181  Q
    |||||||||||||||| |  ||||| |||||||||||| |||||||  | ||||| |||||  |||||||||||||||||| ||||||||||||| |||     
T  1334996 gcactctttaagcatcccaaatttaataattattctttaaaaaaatcaactattacaatttccaatgcattcaatatacaatttttcattaaaaacttat 1334897  T
Q  182 tattttaaatgcttaaagaatgttccgaagacactcgttaacattt 227  Q
     |||| || |||||||||| || ||||  |||| ||||||||||||    
T  1334896 catttaaagtgcttaaagagtgctccggggacaatcgttaacattt 1334851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 102 - 227
Target Start/End: Complemental strand, 31017400 - 31017275
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaa 201  Q
    |||||||||||||||||| ||||| |  |||||| ||||||| |||||||| |||| |||||||||||||||||| ||   |||| || |||||||||||    
T  31017400 atttagtaattattctttaaaaaagtcaaatattttaattttcaatgcatttaatacacaacttttcattaaaaacttttcatttaaagtgcttaaagaa 31017301  T
Q  202 tgttccgaagacactcgttaacattt 227  Q
    ||  |||||| |||||||||||||||    
T  31017300 tgccccgaaggcactcgttaacattt 31017275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 9449065 - 9448948
Alignment:
Q  82 gcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttac 181  Q
    |||||||||||||| |||  |||||||||||||||||||||||| |  | |||||||||||| ||| ||||||||| |||||||||||||||||| ||||    
T  9449065 gcactctttaagcaactcaaatttagtaattattcttttaaaaa-tcaactattataattttcaatacattcaatacacaacttttcattaaaaacttac 9448967  T
Q  182 tattttaaatgcttaaaga 200  Q
     |||| || || |||||||    
T  9448966 catttaaagtgtttaaaga 9448948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 102 - 204
Target Start/End: Complemental strand, 19890281 - 19890179
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaa 201  Q
    |||||||||||||||||||||||| |  | ||||| |||||  |||||||| |||| |||||||||||||||||| ||| |||||||| |||||||||||    
T  19890281 atttagtaattattcttttaaaaagtcaactattacaatttccaatgcatttaatacacaacttttcattaaaaacttattattttaagtgcttaaagaa 19890182  T
Q  202 tgt 204  Q
    |||    
T  19890181 tgt 19890179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 82 - 227
Target Start/End: Complemental strand, 34904900 - 34904755
Alignment:
Q  82 gcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttac 181  Q
    |||||||||||| |||||  ||||||||||||||||||||||||||  | ||||| ||||||||||| ||| |||| | || |||||||||| || ||||    
T  34904900 gcactctttaagtatctcatatttagtaattattcttttaaaaaatcaactattacaatttttaatgaatttaatacaaaatttttcattaataacttac 34904801  T
Q  182 tattttaaatgcttaaagaatgttccgaagacactcgttaacattt 227  Q
     |||| || |||||||||| || |||| |  |||||||| ||||||    
T  34904800 aatttaaagtgcttaaagagtgctccggaagcactcgttgacattt 34904755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 186
Target Start/End: Original strand, 4762318 - 4762447
Alignment:
Q  57 ggtcttcttaacgagtgttcctaaagcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaat 156  Q
    |||||| |||||||||| |||   | |||| |||||||||| |  |||||||||||||| ||||| ||| |  | |||||||||||| ||||||||||||    
T  4762318 ggtcttgttaacgagtgctcccggatcactgtttaagcatcccaaatttagtaattattattttataaagtcaactattataattttcaatgcattcaat 4762417  T
Q  157 atacaacttttcattaaaaatttactattt 186  Q
    | |||| |||| ||||||||||||||||||    
T  4762418 acacaattttttattaaaaatttactattt 4762447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 228
Target Start/End: Original strand, 37993092 - 37993218
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaa 201  Q
    ||||| ||| |||||||| |||||||  | ||||| |||||| |||||||| |||| | || |||| |||||||||||||||||| ||||| ||||||||    
T  37993092 atttaataactattctttcaaaaaatcaactattacaattttcaatgcatttaatacataattttttattaaaaatttactatttaaaatgtttaaagaa 37993191  T
Q  202 tgttccgaagacactcgttaacatttc 228  Q
    || | |  |||||||| ||||||||||    
T  37993192 tgcttcagagacactctttaacatttc 37993218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 199
Target Start/End: Complemental strand, 38533975 - 38533864
Alignment:
Q  87 ctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattt 186  Q
    |||||||||||||  |||||||||||||| ||||||| | |  | |||| |||||| |||||||||||||| |||| ||||| ||| ||| |||||||||    
T  38533975 ctttaagcatctcaaatttagtaattatt-ttttaaatagtcaactattgtaatttctaatgcattcaatacacaatttttctttacaaacttactattt 38533877  T
Q  187 taaatgcttaaag 199  Q
     ||||||||||||    
T  38533876 caaatgcttaaag 38533864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 227
Target Start/End: Original strand, 41933145 - 41933270
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaa 201  Q
    |||||| ||||||||||||||||| |  | ||||| |||||| |||||| ||| || ||||||||| || |||||||||||| || || ||||||||||     
T  41933145 atttagcaattattcttttaaaaagtcaactattacaattttcaatgcactcagtaaacaactttttataaaaaatttactaattaaagtgcttaaagag 41933244  T
Q  202 tgttccgaagacactcgttaacattt 227  Q
    || ||||   ||||||||||| ||||    
T  41933245 tgctccgggaacactcgttaatattt 41933270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 227
Target Start/End: Original strand, 15505539 - 15505683
Alignment:
Q  83 cactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttact 182  Q
    ||||||||||| || ||  ||||| |||||||||||| ||||| |  | |||||||||||| ||| ||||||||| |||||||||||||  ||| |||||    
T  15505539 cactctttaagtatttcaaatttaataattattctttcaaaaagtaaactattataattttcaatacattcaatacacaacttttcattccaaacttact 15505638  T
Q  183 attttaaatgcttaaagaatgttccgaagacactcgttaacattt 227  Q
    |||| || || || |||| ||   |  ||||||||||||||||||    
T  15505639 atttaaagtgtttcaagagtgccacagagacactcgttaacattt 15505683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 199
Target Start/End: Complemental strand, 38533456 - 38533341
Alignment:
Q  83 cactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttact 182  Q
    |||||||||||||||||  ||||| ||||| || ||||||| | |  | |||| |||||| |||||||||||||| |||| ||||| ||| ||| |||||    
T  38533456 cactctttaagcatctcaaatttaataatt-ttattttaaatagtcaactattgtaatttctaatgcattcaatacacaatttttctttacaaaattact 38533358  T
Q  183 attttaaatgcttaaag 199  Q
    |||| ||||||||||||    
T  38533357 atttcaaatgcttaaag 38533341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 5524478 - 5524570
Alignment:
Q  105 tagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaa 197  Q
    ||||||||||| |||| |||| || | ||||| || ||||||||||||||||  ||||||||| ||| || ||||||||||| || |||||||    
T  5524478 tagtaattatttttttgaaaagttaattattacaacttttaatgcattcaatgcacaactttttatttaagatttactatttaaagtgcttaa 5524570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 200
Target Start/End: Complemental strand, 29239336 - 29239243
Alignment:
Q  106 agtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaaga 200  Q
    |||||||||| ||||||||| |  | ||||| |||||| ||||||||||||| || | ||||||||||| |||||||| || || ||||||||||    
T  29239336 agtaattatt-ttttaaaaagtcaactattacaattttcaatgcattcaatacaccatttttcattaaagatttactaattaaagtgcttaaaga 29239243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 43228917 - 43228843
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaa 176  Q
    |||||| |||||||| |||||||| || | |||||||||||||||| |||| ||||||||| |||| || |||||    
T  43228917 atttagcaattattcctttaaaaagttaattattataatttttaattcattaaatatacaattttttataaaaaa 43228843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 14295642 - 14295707
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaactttt 167  Q
    |||||||||||||||||||||||  || | ||||| |||||| |||||||| |||| |||||||||    
T  14295642 atttagtaattattcttttaaaaggttaactattacaattttcaatgcattgaatacacaactttt 14295707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 19514892 - 19515008
Alignment:
Q  109 aattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaatgttccg 208  Q
    |||||||||||| |||| |  | |||||||||| | |||||| | |||||||||||||||||  |||| |||| |||| || |||||||||| ||  ||     
T  19514892 aattattctttttaaaagtcaactattataattatcaatgcaatgaatatacaacttttcatataaaacttacaatttaaagtgcttaaagagtg-ccct 19514990  T
Q  209 aagacactcgttaacatt 226  Q
    | ||||||||||||||||    
T  19514991 aggacactcgttaacatt 19515008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 15080558 - 15080598
Alignment:
Q  112 tattcttttaaaaaattgaatattataatttttaatgcatt 152  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  15080558 tattcttttaaaaaattaaatattataaattttaatgcatt 15080598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 40348003 - 40347915
Alignment:
Q  138 aatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaatgttccgaagacactcgttaacattt 227  Q
    ||||||||||| ||| |||| |||| ||||||| ||||||| ||||||||||   |||||| | || ||||||| |||| ||||||||||    
T  40348003 aatttttaatgtattaaatacacaaattttcataaaaaatt-actattttaagctcttaaatagtgctccgaaggcacttgttaacattt 40347915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 84 - 229
Target Start/End: Complemental strand, 62635 - 62490
Alignment:
Q  84 actctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttacta 183  Q
    ||||||||||||||||  |||||||||||||||||||||||| |  | |||||  ||||| ||||||||||||| | || |||| |||||||| ||||||    
T  62635 actctttaagcatctcatatttagtaattattcttttaaaaagtcaactattacgattttcaatgcattcaatacataattttttattaaaaacttacta 62536  T
Q  184 ttttaaatgcttaaagaatgttccgaagacactcgttaacatttct 229  Q
    ||| || |||||||||| |   ||| ||||||||||||||||||||    
T  62535 tttaaagtgcttaaagagtaccccggagacactcgttaacatttct 62490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 89 - 228
Target Start/End: Original strand, 1135162 - 1135301
Alignment:
Q  89 ttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactatttta 188  Q
    |||||||||||  |||||||||||||||||||||||| |  | ||||| |||||| |||| ||||||||||||||||||| ||||||| |||| |||| |    
T  1135162 ttaagcatctcgaatttagtaattattcttttaaaaagtcaactattacaattttcaatgtattcaatatacaacttttccttaaaaacttaccatttaa 1135261  T
Q  189 aatgcttaaagaatgttccgaagacactcgttaacatttc 228  Q
    | || ||||||| || || || | ||||||||||||||||    
T  1135262 agtgtttaaagagtgctctgacggcactcgttaacatttc 1135301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 102 - 228
Target Start/End: Complemental strand, 4384227 - 4384102
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaa 201  Q
    ||||||||||||||||||||||||||  | ||||| |||||  ||||||||||||| ||||| ||||||||||||||||  |||| || ||||||||||     
T  4384227 atttagtaattattcttttaaaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaatttatcatttaaagtgcttaaagag 4384129  T
Q  202 tgttccgaagacactcgttaacatttc 228  Q
    ||| ||||  |||||||||||| ||||    
T  4384128 tgtcccgagaacactcgttaacgtttc 4384102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 57 - 200
Target Start/End: Complemental strand, 2258228 - 2258085
Alignment:
Q  57 ggtcttcttaacgagtgttcctaaagcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaat 156  Q
    |||||| ||||||||| ||||    |||||||||||||||| |  ||||| |||||||||||||||||| || |  |||| ||||||||||| ||| |||    
T  2258228 ggtcttgttaacgagttttcccgtggcactctttaagcatcccaaatttaataattattcttttaaaaagttaatcattacaatttttaatgtatttaat 2258129  T
Q  157 atacaacttttcattaaaaatttactattttaaatgcttaaaga 200  Q
    | ||||||||||||| |||| |||| |||| || ||||||||||    
T  2258128 acacaacttttcatttaaaacttaccatttaaagtgcttaaaga 2258085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 27801318 - 27801220
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaaga 200  Q
    |||||||||||||||||||||||| |  | ||||| |||||| |||||||||| || ||||||||| |||||||| ||||||||| || ||||||||||    
T  27801318 atttagtaattattcttttaaaaagtcaactattacaattttcaatgcattcattacacaactttttattaaaaacttactatttaaagtgcttaaaga 27801220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 228
Target Start/End: Complemental strand, 42636478 - 42636332
Alignment:
Q  82 gcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttac 181  Q
    |||||||||||||||| |  |||||||||||||| ||  ||||| |  | ||||| |||||  |||||||| |||| |||||||||||||||||| ||||    
T  42636478 gcactctttaagcatcccaaatttagtaattattattcaaaaaagtcaactattacaatttacaatgcatttaatacacaacttttcattaaaaacttac 42636379  T
Q  182 tattttaaatgcttaaagaatgttccgaagacactcgttaacatttc 228  Q
     |||| || |||||||||| || ||||    ||||||||||||||||    
T  42636378 catttaaagtgcttaaagagtgctccgggagcactcgttaacatttc 42636332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 3520894 - 3520826
Alignment:
Q  108 taattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaa 176  Q
    ||||||||||||||||||||  | ||||| | |||||||||||||||||| | ||||||||||||||||    
T  3520894 taattattcttttaaaaaatcaactattacagtttttaatgcattcaatacataacttttcattaaaaa 3520826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 35901945 - 35902041
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaa 198  Q
    ||||| |||||||| ||||||||| |  | ||||| |||||  ||||||||||||| | |||||||||||||||| ||| ||||| |||||||||||    
T  35901945 atttaataattatttttttaaaaagtcaattattacaatttccaatgcattcaatacagaacttttcattaaaaacttattatttaaaatgcttaaa 35902041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 12684605 - 12684490
Alignment:
Q  83 cactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttact 182  Q
    ||||||||||||||  |  ||||| |||||||||||| ||| |||  | ||||| ||||| ||||||||||| || | ||||||| |||||||||||| |    
T  12684605 cactctttaagcattccaaatttaataattattctttcaaagaatcaactattacaatttctaatgcattcattacaaaacttttaattaaaaatttatt 12684506  T
Q  183 attttaaatgcttaaa 198  Q
    |||| || ||||||||    
T  12684505 atttaaagtgcttaaa 12684490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 227
Target Start/End: Original strand, 12954724 - 12954867
Alignment:
Q  84 actctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttacta 183  Q
    ||||| ||| ||||||  |||||||||||||| |||| ||||||  | |||||||||||| |||  ||| |||| |||| |||||| ||||||||||  |    
T  12954724 actctataaacatctcaaatttagtaattattttttttaaaaatcaactattataattttcaatagatttaatacacaatttttcaataaaaatttatca 12954823  T
Q  184 ttttaaatgcttaaagaatgttccgaagacactcgttaacattt 227  Q
    ||| || | | |||||| |||  || ||||||||||||||||||    
T  12954824 tttaaagtacataaagagtgtctcggagacactcgttaacattt 12954867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 228
Target Start/End: Original strand, 37427202 - 37427330
Alignment:
Q  102 atttagtaattattcttttaaaaaa---ttgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaa 198  Q
    |||||||||||||||||||||||||   |  | ||||| |||||| |||| | ||||||  ||||||||||||||||  |||| |||| || ||||||||    
T  37427202 atttagtaattattcttttaaaaaaaaatcaattattacaattttcaatgtaatcaatactcaacttttcattaaaatcttaccatttaaagtgcttaaa 37427301  T
Q  199 gaatgttccgaagacactcgttaacatttc 228  Q
    || || |||| || ||||||||||||||||    
T  37427302 gagtg-tccggaggcactcgttaacatttc 37427330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 176
Target Start/End: Original strand, 28207619 - 28207712
Alignment:
Q  83 cactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaa 176  Q
    ||||||||||||||| |  |||||  ||| ||||||||||||| |  | ||||| |||||  ||||||||||||| ||||||||||||||||||    
T  28207619 cactctttaagcatcccaaatttaacaataattcttttaaaaagtcaactattacaatttccaatgcattcaatacacaacttttcattaaaaa 28207712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 12829982 - 12829867
Alignment:
Q  83 cactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttact 182  Q
    |||| |||||||||||   ||||| |||||||| ||||||||| |  | ||||| ||||   ||||||||||||||| || ||||||||||||| ||||     
T  12829982 cactttttaagcatctaaaatttaataattattattttaaaaagtctattattacaattaacaatgcattcaatatataatttttcattaaaaacttacc 12829883  T
Q  183 attttaaatgcttaaa 198  Q
    |||| || ||||||||    
T  12829882 atttaaagtgcttaaa 12829867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 200
Target Start/End: Original strand, 3146037 - 3146152
Alignment:
Q  89 ttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattca----atatacaacttttcattaaaaatttactat 184  Q
    ||||||||| |  |||||||||||||||||||||||| || | ||||| |||||  ||||||||||    ||  ||| | |||||||||||| |||||||    
T  3146037 ttaagcatcccatatttagtaattattcttttaaaaagttaactattacaatttccaatgcattcattcaatgcacaccgtttcattaaaaacttactat 3146136  T
Q  185 tttaaatgcttaaaga 200  Q
    || || ||||||||||    
T  3146137 ttaaagtgcttaaaga 3146152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 170
Target Start/End: Complemental strand, 37813515 - 37813426
Alignment:
Q  82 gcactctttaagcatctctgatttagtaattattcttttaaaaaattgaa-tattataatttttaatgcattcaatatacaacttttcat 170  Q
    |||||||||||| ||| |  ||||||||||||||||||||||||| | ||  |||| |||||  |||||||| |||| ||||||||||||    
T  37813515 gcactctttaaggatcccaaatttagtaattattcttttaaaaaagtcaaccattacaatttccaatgcattgaatacacaacttttcat 37813426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 205
Target Start/End: Original strand, 884430 - 884533
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaa-tattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaaga 200  Q
    ||||||||||||||||| ||||||| | || ||||| |||||| |||| ||| |||| |||| ||||||||||||| || | |||| || ||||||||||    
T  884430 atttagtaattattcttataaaaaaatcaattattacaattttcaatg-atttaatacacaatttttcattaaaaactttcaatttaaagtgcttaaaga 884528  T
Q  201 atgtt 205  Q
     ||||    
T  884529 gtgtt 884533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 41567993 - 41568037
Alignment:
Q  132 tattataatttttaatgcattcaatatacaacttttcattaaaaa 176  Q
    ||||||||||||||||| ||| ||||| |||||||||||||||||    
T  41567993 tattataatttttaatgtattaaatattcaacttttcattaaaaa 41568037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 182
Target Start/End: Complemental strand, 167955 - 167856
Alignment:
Q  83 cactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttact 182  Q
    ||||||||||| |||||  |||||  ||||||||||||||||| |  | |||||||||||  |||||||| | || | ||||||||||| |||| |||||    
T  167955 cactctttaagtatctcaaatttaaaaattattcttttaaaaagtcaactattataatttccaatgcatttattacataacttttcatttaaaacttact 167856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 16723332 - 16723225
Alignment:
Q  57 ggtcttcttaacgagtgttcctaaagcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaat 156  Q
    |||||| ||||||||||  || |  |||||||||||||||| |  |||| |||||||||||||||||||||  | || || |||||| ||| |||||||     
T  16723332 ggtcttgttaacgagtgaccccagggcactctttaagcatcccaaattttgtaattattcttttaaaaaatcaactaatacaattttcaatacattcaac 16723233  T
Q  157 atacaact 164  Q
    | ||||||    
T  16723232 acacaact 16723225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 26750607 - 26750690
Alignment:
Q  145 aatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaatgttccgaagacactcgttaacatttc 228  Q
    ||||||||||||  | || ||||||||||||  ||||||||| || |||||||||| || |||||   ||||||||||||||||    
T  26750607 aatgcattcaatgcataatttttcattaaaatcttactatttaaagtgcttaaagagtgctccgagcgcactcgttaacatttc 26750690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 200
Target Start/End: Complemental strand, 33949663 - 33949544
Alignment:
Q  81 agcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaattta 180  Q
    |||||||||||||||| |   ||||||||| |||| ||||||||| |  | ||||| |||||  |||||| |||||| |||||||||||| || || |||    
T  33949663 agcactctttaagcatattaaatttagtaagtattgttttaaaaattcaactattacaatttcaaatgcactcaatacacaacttttcataaataactta 33949564  T
Q  181 ctattttaaatgcttaaaga 200  Q
    ||| || || || |||||||    
T  33949563 ctaattaaagtgtttaaaga 33949544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 1576363 - 1576325
Alignment:
Q  194 ttaaagaatgttccgaagacactcgttaacatttctcat 232  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  1576363 ttaaagaatgttccggaaacactcgttaacatttctcat 1576325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 227
Target Start/End: Complemental strand, 9735396 - 9735272
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaa-tattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaaga 200  Q
    ||||| |||||||| |||||||||| | || |||||| | ||| ||| |||| |||| ||||||||||||||||||||||  |||| ||||  ||||| |    
T  9735396 atttaataattatt-ttttaaaaaagtcaactattatgactttcaatacatttaatacacaacttttcattaaaaatttatcatttaaaatatttaaaaa 9735298  T
Q  201 atgttccgaagacactcgttaacattt 227  Q
     |||  |||| ||||||||||||||||    
T  9735297 gtgtctcgaa-acactcgttaacattt 9735272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 230
Target Start/End: Original strand, 33013041 - 33013186
Alignment:
Q  84 actctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttacta 183  Q
    |||||||||||||  |  |||||  ||||||||||||||||| |  | ||||| |||||  |||| | |||||| |||||||||||| || || ||||||    
T  33013041 actctttaagcataccaaatttaacaattattcttttaaaaagtcaactattacaatttccaatgtactcaatacacaacttttcataaagaacttacta 33013140  T
Q  184 ttttaaatgcttaaagaatgttccgaagacactcgttaacatttctc 230  Q
     || || |||||||||| ||  | | || ||||||||||||||||||    
T  33013141 attaaagtgcttaaagagtgcccaggag-cactcgttaacatttctc 33013186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 186
Target Start/End: Complemental strand, 36356062 - 36355965
Alignment:
Q  84 actctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttacta 183  Q
    |||||||||| ||| |  ||| |||||||||||||||||||| |     |||  ||||| ||||||||| |||| |||||||||||||||||| |||| |    
T  36356062 actctttaagaatcccaaattaagtaattattcttttaaaaact-----attgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 36355968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 2888825 - 2888760
Alignment:
Q  89 ttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattca 154  Q
    ||||||||| |  |||||||||||||| ||||||||| || | |||||||||||  ||||||||||    
T  2888825 ttaagcatcccatatttagtaattatttttttaaaaagttaactattataatttccaatgcattca 2888760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 9024502 - 9024563
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaac 163  Q
    |||||||||||||||||| |||||||  | ||||| ||||||| ||||||| |||| |||||    
T  9024502 atttagtaattattctttcaaaaaatcaactattacaattttttatgcattaaatacacaac 9024563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 24695761 - 24695834
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaa 175  Q
    |||||||||||||| ||||||||| |  | ||||| ||||| ||||||| | |||| ||||||||| |||||||    
T  24695761 atttagtaattattattttaaaaagtcaactattacaatttctaatgcagtgaatacacaactttttattaaaa 24695834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 23984336 - 23984392
Alignment:
Q  171 taaaaatttactattttaaatgcttaaagaatgttccgaagacactcgttaacattt 227  Q
    |||||||||||||||| |||| ||||| || |||||  ||||||||||||| |||||    
T  23984336 taaaaatttactatttaaaatccttaaggagtgttcttaagacactcgttagcattt 23984392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 45197449 - 45197517
Alignment:
Q  160 caacttttcattaaaaatttactattttaaatgcttaaagaatgttccgaagacactcgttaacatttc 228  Q
    ||||||||||| ||||||||||||||| |  || ||||||| ||| | | || ||||||||||||||||    
T  45197449 caacttttcataaaaaatttactatttaatgtgtttaaagagtgtcctggaggcactcgttaacatttc 45197517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 102 - 227
Target Start/End: Complemental strand, 17215775 - 17215650
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaa 201  Q
    |||||||||||||| ||||||||| |  | ||||| |||||| ||||||||||||| |||| |||| |||||||| |||| |||| || ||||||||||     
T  17215775 atttagtaattatttttttaaaaagtcaactattacaattttcaatgcattcaataaacaattttttattaaaaacttaccatttaaagtgcttaaagag 17215676  T
Q  202 tgttccgaagacactcgttaacattt 227  Q
    || ||||||| |||||||||||||||    
T  17215675 tgatccgaaggcactcgttaacattt 17215650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 64 - 227
Target Start/End: Original strand, 28874375 - 28874538
Alignment:
Q  64 ttaacgagtgttcctaaagcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaac 163  Q
    ||||| |||||||||   ||||||||||||||||    | ||||||||||||||||| ||||||  | |||||||||||  ||||||||||||| | ||     
T  28874375 ttaacaagtgttcctggtgcactctttaagcatcataaaattagtaattattcttttgaaaaatcaactattataatttccaatgcattcaatacaaaat 28874474  T
Q  164 ttttcattaaaaatttactattttaaatgcttaaagaatgttccgaagacactcgttaacattt 227  Q
    ||||||||||||| ||  ||||| ||||| ||||||||| | ||| || |||||||||||||||    
T  28874475 ttttcattaaaaacttgttatttaaaatgtttaaagaatatcccggaggcactcgttaacattt 28874538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 108 - 228
Target Start/End: Original strand, 32823697 - 32823817
Alignment:
Q  108 taattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaatgttcc 207  Q
    ||||||||||||| |||| |  | ||||| |||||| ||||||||||||| |||||||||||||||||| ||  ||||| || |||||||||| || |||    
T  32823697 taattattcttttgaaaagtcaattattacaattttcaatgcattcaatacacaacttttcattaaaaacttgttatttaaagtgcttaaagagtgctcc 32823796  T
Q  208 gaagacactcgttaacatttc 228  Q
    | || ||||||||||||||||    
T  32823797 ggaggcactcgttaacatttc 32823817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 132 - 227
Target Start/End: Original strand, 30801785 - 30801880
Alignment:
Q  132 tattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaatgttccgaagacactcgttaacattt 227  Q
    |||||||||||| ||||||||||||| ||||||||| |||||||| || |||||| || |||||||||||||| |||  |  ||||||||||||||    
T  30801785 tattataattttcaatgcattcaatacacaacttttaattaaaaacttgctatttaaagtgcttaaagaatgtcccgggggtactcgttaacattt 30801880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 228
Target Start/End: Original strand, 30739613 - 30739739
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaa 201  Q
    |||||||||||||||| ||||||| || | |  ||  ||||  ||||||||||||| |||| |||||||||||||||||  |||||||||||||||| |     
T  30739613 atttagtaattattctattaaaaagttaactggtacgatttccaatgcattcaatacacaatttttcattaaaaatttatcattttaaatgcttaaaaag 30739712  T
Q  202 tgttccgaagacactcgttaacatttc 228  Q
    || |||   ||||||||||||||||||    
T  30739713 tggtccatggacactcgttaacatttc 30739739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 176
Target Start/End: Original strand, 1840977 - 1841071
Alignment:
Q  82 gcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaa 176  Q
    ||||||||||||||| |   ||||| ||||||||||||||||||||  | ||||| |||||  ||||||||||||| ||||||||| ||||||||    
T  1840977 gcactctttaagcatattaaatttaataattattcttttaaaaaatcaactattacaatttccaatgcattcaatacacaacttttaattaaaaa 1841071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 200
Target Start/End: Original strand, 7421686 - 7421784
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaaga 200  Q
    ||||||||||||||  |||||||| |  ||||||| |||||| |||||||| |||| ||||||||| | ||||| |||||||||| || ||||||||||    
T  7421686 atttagtaattatttatttaaaaagtcaaatattacaattttcaatgcatttaatacacaactttttaataaaactttactatttaaagtgcttaaaga 7421784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 132 - 228
Target Start/End: Original strand, 31855098 - 31855194
Alignment:
Q  132 tattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaatgttccgaagacactcgttaacatttc 228  Q
    ||||| |||||  |||||||||||||||||| ||||||||||||| ||||||||| || |||||||||| | | ||||| |||   |||||||||||    
T  31855098 tattacaatttccaatgcattcaatatacaatttttcattaaaaacttactatttaaagtgcttaaagagtatcccgaatacatatgttaacatttc 31855194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 23399124 - 23399251
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaa 201  Q
    |||||| ||||||||||||||||| || | |||||||||||| |||| ||||  |  | ||||||| ||  |||| ||| ||||| || | ||||||||     
T  23399124 atttagaaattattcttttaaaaagttaactattataattttcaatgtattcgttgcataacttttaatataaaacttaatatttaaagtacttaaagag 23399223  T
Q  202 tgttccgaagacactcgttaacatttct 229  Q
    |||| || ||||||||||||||||||||    
T  23399224 tgtttcggagacactcgttaacatttct 23399251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 229
Target Start/End: Complemental strand, 24103870 - 24103744
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaa 201  Q
    ||||||||||||||  ||| ||||||| | ||||| ||||||||||| ||| |||| |||| |||| |||||||||||| || ||||||   |||||||     
T  24103870 atttagtaattatttgttttaaaaattaactattacaatttttaatgaatttaatacacaatttttaattaaaaatttatta-tttaaagtattaaagag 24103772  T
Q  202 tgttccgaagacactcgttaacatttct 229  Q
    |||| || |  |||||||||||||||||    
T  24103771 tgtttcggaatcactcgttaacatttct 24103744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 182
Target Start/End: Complemental strand, 26669390 - 26669291
Alignment:
Q  83 cactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttact 182  Q
    |||||||||||||  ||  ||||| |||||||||||||||||| |  | ||||| |||||| | || ||| |||| | ||||||||||||||||||||||    
T  26669390 cactctttaagcacttcatatttaataattattcttttaaaaagtcaactattacaattttcactgtatttaatacataacttttcattaaaaatttact 26669291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 9762798 - 9762915
Alignment:
Q  83 cactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttca-ttaaaaatttac 181  Q
    |||||||||| |||||   |||||||| || |||||||||||| |  | ||||||||||| |||| |||||| || ||||||||||| ||||||||||||    
T  9762798 cactctttaaacatcttaaatttagtattt-ttcttttaaaaagtcaattattataatttctaatacattcagtacacaacttttcatttaaaaatttac 9762896  T
Q  182 tattttaaatgcttaaaga 200  Q
     |||| || || |||||||    
T  9762897 catttaaagtgattaaaga 9762915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 227
Target Start/End: Original strand, 27778768 - 27778891
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaat-attataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaaga 200  Q
    |||||||||||||| |||| ||||| | ||  ||||||||||| ||||||||||||| || | |||||| ||||||||||| |||| || ||||||||||    
T  27778768 atttagtaattattttttttaaaaagtcaacgattataattttcaatgcattcaatacac-atttttca-taaaaatttaccatttaaagtgcttaaaga 27778865  T
Q  201 atgttccgaagacactcgttaacattt 227  Q
     || || ||| |||| |||||||||||    
T  27778866 gtgctcggaa-acacacgttaacattt 27778891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 170
Target Start/End: Original strand, 3766271 - 3766359
Alignment:
Q  82 gcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcat 170  Q
    |||||||||||||||| |  |||| | ||||||||||||||||| |  | ||||| ||||| |||| |||||| || | ||||||||||    
T  3766271 gcactctttaagcatcccaaatttggaaattattcttttaaaaagtcaattattacaatttataatacattcattacataacttttcat 3766359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 9301904 - 9301996
Alignment:
Q  84 actctttaagcatctctgatttagtaattattc-ttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaa 175  Q
    |||||||||| ||||   ||||||||||||||| |||||||||||  |  ||||| ||||  |||||||| |||||||||| |||||| ||||    
T  9301904 actctttaaggatcttaaatttagtaattattctttttaaaaaatcaacaattattatttccaatgcattgaatatacaacgtttcataaaaa 9301996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 64 - 227
Target Start/End: Original strand, 1041 - 1204
Alignment:
Q  64 ttaacgagtgttcctaaagcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaac 163  Q
    ||||| |||||||||   ||||||||||||||||    | ||||||||||||||||| ||||||  | |||||||||||  ||||||||||||| | ||     
T  1041 ttaacaagtgttcctggtgcactctttaagcatcataaaattagtaattattcttttgaaaaatcaactattataatttccaatgcattcaatacaaaat 1140  T
Q  164 ttttcattaaaaatttactattttaaatgcttaaagaatgttccgaagacactcgttaacattt 227  Q
    ||||||||||||| ||  ||||| ||||| ||||||||| | ||| || |||||||||||||||    
T  1141 ttttcattaaaaacttgttatttaaaatgtttaaagaatatcccggaggcactcgttaacattt 1204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 47187932 - 47187815
Alignment:
Q  83 cactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttact 182  Q
    ||||||||||||||| |  ||||||||||||||| ||||||||||  | |||||||||||  ||||||||||||| | || ||||||||||||| ||||     
T  47187932 cactctttaagcatcccaaatttagtaattattcatttaaaaaatcaactattataatttccaatgcattcaatacataatttttcattaaaaacttacc 47187833  T
Q  183 attttaaatgcttaaaga 200  Q
    ||||||| || |||||||    
T  47187832 attttaagtgtttaaaga 47187815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 18433045 - 18432947
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaaga 200  Q
    |||||||||||||||||||||||  || | | ||| ||||||||||| |||||||||||||||||||||||| |||||| ||||| ||  |||||||||    
T  18433045 atttagtaattattcttttaaaatgttaactgttacaatttttaatgtattcaatatacaacttttcattaagaatttaatatttaaacggcttaaaga 18432947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 83 - 228
Target Start/End: Original strand, 2864138 - 2864281
Alignment:
Q  83 cactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttact 182  Q
    |||||||||| |||| |  |||||| ||||||||||| ||||| |  | ||||| |||||  ||||||||||||| |||||||||||||||||| |||||    
T  2864138 cactctttaaacatcccatatttaggaattattcttt-aaaaagtcaactattacaatttccaatgcattcaatacacaacttttcattaaaaacttact 2864236  T
Q  183 attttaaatgcttaaagaatgttccgaagacactcgttaacatttc 228  Q
    |||| || |||||||||| || ||||  | ||||||||||||||||    
T  2864237 atttaaagtgcttaaagagtgctccg-gggcactcgttaacatttc 2864281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 228
Target Start/End: Original strand, 3982279 - 3982404
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaa 201  Q
    |||||||||||||| ||  ||||| |  | ||||||||||| ||||||||| |||| ||||||||| || ||||||||||||||| || || |||||||     
T  3982279 atttagtaattatttttagaaaaagtcaactattataatttataatgcattgaatagacaacttttaat-aaaaatttactatttaaagtgtttaaagag 3982377  T
Q  202 tgttccgaagacactcgttaacatttc 228  Q
    ||  ||| |||||||||||||||||||    
T  3982378 tgcaccggagacactcgttaacatttc 3982404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 45640591 - 45640695
Alignment:
Q  132 tattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaatgttccgaagacactcgttaacatttctca 231  Q
    |||||||||||| |||||||||| || |||| ||||||| ||||| ||||||||| ||||||||||||| |||  ||  |||||||||||||||||| ||    
T  45640591 tattataattttcaatgcattcattacacaa-ttttcatcaaaaacttactatttaaaatgcttaaagagtgtctcggggacactcgttaacatttccca 45640689  T
Q  232 ttaatt 237  Q
     |||||    
T  45640690 ataatt 45640695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 200
Target Start/End: Complemental strand, 38748831 - 38748715
Alignment:
Q  84 actctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttacta 183  Q
    |||||||||||||  |  |||||| ||||||||||||||||| |  | |||||||||||| |||||| |||||| |||||||||||| || || ||||||    
T  38748831 actctttaagcataccaaatttagaaattattcttttaaaaagtcaactattataattttcaatgcactcaatacacaacttttcataaataacttacta 38748732  T
Q  184 ttttaaatgcttaaaga 200  Q
     || || ||||||||||    
T  38748731 attaaagtgcttaaaga 38748715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 228
Target Start/End: Complemental strand, 43397129 - 43396981
Alignment:
Q  82 gcactctttaagcatctctgatttagtaattat-tcttttaaaaaattgaa-tattataatttttaatgcattcaatatacaacttttcattaaaaattt 179  Q
    ||||||||||||||||    ||||||||||||| | |||| ||||| | || |||||||||||  |||||||| |||| |||||||||||||||||| ||    
T  43397129 gcactctttaagcatcctaaatttagtaattatatatttttaaaaagtcaactattataatttccaatgcatttaatacacaacttttcattaaaaactt 43397030  T
Q  180 actattttaaatgcttaaagaatgttccgaagacactcgttaacatttc 228  Q
    ||||||| || || |||| || ||  |||| | ||||||||||||||||    
T  43397029 actatttaaagtgtttaacgagtgcgccgagggcactcgttaacatttc 43396981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 196
Target Start/End: Complemental strand, 48022463 - 48022351
Alignment:
Q  84 actctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttacta 183  Q
    |||||||||||||| |  |||||||||||||| ||||||||| || | ||||  |||||| ||||||||||||| | |  |||| |||||||| ||||||    
T  48022463 actctttaagcatcccatatttagtaattattgttttaaaaagttaactattgcaattttcaatgcattcaatacatatttttttattaaaaacttacta 48022364  T
Q  184 ttttaaatgctta 196  Q
    ||| |||||||||    
T  48022363 tttaaaatgctta 48022351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 8794412 - 8794557
Alignment:
Q  84 actctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcat--taaaaatttac 181  Q
    ||||||||||||||    |||||||||||||||||||||||| |  | |||||||||||| |||||| || ||| ||||||||| ||   ||||||||||    
T  8794412 actctttaagcatcctaaatttagtaattattcttttaaaaagtcaactattataattttcaatgcactccatacacaactttttataaaaaaaatttac 8794511  T
Q  182 tattttaaatgcttaaagaatgttccgaagacactcgttaacatttc 228  Q
    || || || | |||||||| || || | |||||||||||||||||||    
T  8794512 taattaaagtacttaaagattgctctg-agacactcgttaacatttc 8794557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 228
Target Start/End: Original strand, 44329610 - 44329736
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaa 201  Q
    ||||| |||||||||||||||||| |  | |||||||||||| ||||||||||||| | || |||| | |||||| || |||||| || || ||||||||    
T  44329610 atttaataattattcttttaaaaagtcaactattataattttcaatgcattcaatacataattttttactaaaaactttctatttaaagtgtttaaagaa 44329709  T
Q  202 tgttccgaagacactcgttaacatttc 228  Q
    |||   | | |||||||||||||||||    
T  44329710 tgtcgtggaaacactcgttaacatttc 44329736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 228
Target Start/End: Complemental strand, 34232818 - 34232677
Alignment:
Q  83 cactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttact 182  Q
    |||||||||||||||  | |||||| ||||||||||||||||| |  | ||||| |||||| ||||| ||||||| |||||||    | |||| |  |||    
T  34232818 cactctttaagcatccttaatttagcaattattcttttaaaaagtcaactattacaattttcaatgctttcaatacacaactt----taaaaagtcaact 34232723  T
Q  183 attttaaatgcttaaagaatgttccgaagacactcgttaacatttc 228  Q
    |||| |  |||||||||| |||||||| | ||||||||||||||||    
T  34232722 atttaaggtgcttaaagagtgttccgagggcactcgttaacatttc 34232677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 108 - 200
Target Start/End: Original strand, 44329484 - 44329576
Alignment:
Q  108 taattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaaga 200  Q
    |||||||||||||||||| |  | |||||||||||| | |||||| |||||| ||||||| |||||||||||  ||||| || ||||||||||    
T  44329484 taattattcttttaaaaagtcaattattataattttcagtgcatttaatatataactttttattaaaaattttatatttaaagtgcttaaaga 44329576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 26811324 - 26811258
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttc 168  Q
    ||||||||||||||||||||||||||| | ||||| |||||  ||| ||| ||||||||||||||||    
T  26811324 atttagtaattattcttttaaaaaattaactattagaatttccaatacatacaatatacaacttttc 26811258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 39150576 - 39150694
Alignment:
Q  82 gcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttac 181  Q
    ||||||||||||||||    ||||||||||||||||| |||||| |  | ||||| |||||  ||||||||||||| | || ||||||||||||  ||||    
T  39150576 gcactctttaagcatcctaaatttagtaattattcttgtaaaaagtcaactattacaatttacaatgcattcaatacataaattttcattaaaatcttac 39150675  T
Q  182 tattttaaatgcttaaaga 200  Q
    || || || ||||||||||    
T  39150676 tagttaaagtgcttaaaga 39150694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 228
Target Start/End: Original strand, 34409730 - 34409873
Alignment:
Q  84 actctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttacta 183  Q
    ||||||||||||| |   ||||||||||| || ||||  |||||  | |||||||||||  ||||||||||||| || | ||||||||||||| |||| |    
T  34409730 actctttaagcattttaaatttagtaattttttttttttaaaatcaattattataatttccaatgcattcaatacac-atttttcattaaaaacttacca 34409828  T
Q  184 ttttaaatgcttaaagaatgttcc-gaagacactcgttaacatttc 228  Q
    ||| || ||| |||||||||| || |||| ||||||||||||||||    
T  34409829 tttaaagtgcataaagaatgtcccagaag-cactcgttaacatttc 34409873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 8365517 - 8365617
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaa 201  Q
    ||||| ||||||||||||||||||||  | ||||| ||| || ||||||||||||| |  | |||||| |||||| ||||||||| | ||| ||||||||    
T  8365517 atttaataattattcttttaaaaaatcaactattacaatcttcaatgcattcaatacatcatttttcaataaaaacttactatttaacatgtttaaagaa 8365616  T
Q  202 t 202  Q
    |    
T  8365617 t 8365617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 225
Target Start/End: Original strand, 39156230 - 39156402
Alignment:
Q  57 ggtcttcttaacgagtgttcctaaagcactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaat 156  Q
    |||||| ||||||||||  ||| |  |||||||||||||||    |||||||||||||||||||||||| |  | || || |||||  ||||||||||||    
T  39156230 ggtcttgttaacgagtgcccctgagacactctttaagcatcaaaaatttagtaattattcttttaaaaagtcaactactacaatttccaatgcattcaat 39156329  T
Q  157 atacaa----cttttcattaaaaatttactattttaaatgcttaaagaatgttccgaagacactcgttaacat 225  Q
    | ||||     |||| ||||||||||||| |||| || || ||||| | || || |||||| |||||||||||    
T  39156330 acacaattttttttttattaaaaatttaccatttaaagtgtttaaaaagtgctctgaagactctcgttaacat 39156402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 44829272 - 44829359
Alignment:
Q  88 tttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaa 175  Q
    |||||||||| |  |||||||||||||||||| ||||  |  | ||||| |||||||||| ||||||||| ||||||||| |||||||    
T  44829272 tttaagcatcccaaatttagtaattattctttaaaaaggtcaactattacaatttttaatacattcaatacacaactttttattaaaa 44829359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 186
Target Start/End: Complemental strand, 40460833 - 40460731
Alignment:
Q  84 actctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttacta 183  Q
    ||||||||||||||    ||||| ||||||||| ||||||||||  | ||||| | |||  |||  ||||||||||||| ||||||||||||| ||||||    
T  40460833 actctttaagcatccaaaatttaataattattcatttaaaaaatcaattattacagtttccaatttattcaatatacaatttttcattaaaaacttacta 40460734  T
Q  184 ttt 186  Q
    |||    
T  40460733 ttt 40460731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 42791253 - 42791138
Alignment:
Q  83 cactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttact 182  Q
    ||||||||||||||||   |||||  ||||||| ||||||||| |  | ||| |  ||||| ||||||||||||| ||| ||||| ||  ||||||||||    
T  42791253 cactctttaagcatcttaaatttaacaattatttttttaaaaagtcaactatcactattttaaatgcattcaatacacagctttttatataaaatttact 42791154  T
Q  183 attttaaatgcttaaa 198  Q
    |||| |||| ||||||    
T  42791153 atttaaaatacttaaa 42791138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 17552847 - 17552921
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaa 176  Q
    ||||| |||||||| ||||||||| |  | ||||||||||||||||| ||| ||||||||| ||||  |||||||    
T  17552847 atttaataattatttttttaaaaagtcaactattataatttttaatgtatttaatatacaattttttgttaaaaa 17552921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 228
Target Start/End: Complemental strand, 30822868 - 30822743
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaa 201  Q
    |||||||||||||||| ||||||| || | ||||| |||||| | |||||| || | |||| || |   ||||||||||| |||| || ||||||||||     
T  30822868 atttagtaattattctcttaaaaagttaattattacaattttcattgcattgaaaacacaatttatttataaaaatttaccatttaaagtgcttaaagat 30822769  T
Q  202 tgttccgaagacactcgttaacatttc 228  Q
    || ||||  |||||| |||||||||||    
T  30822768 tg-tccggggacacttgttaacatttc 30822743  T

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Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 31889213 - 31889275
Alignment:
Q  139 atttttaatgcattcaatatacaactttt-cattaaaaatttactattttaaatgcttaaaga 200  Q
    |||| ||||||||| |||| ||||||||| ||||||||| |||| |||| |||||||||||||    
T  31889213 atttctaatgcatttaatacacaactttttcattaaaaacttaccatttaaaatgcttaaaga 31889275  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 38491235 - 38491309
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaa 176  Q
    |||||||||||||| | ||||||| |  | ||||| |||||  ||||||||||||| |||| |||||||||||||    
T  38491235 atttagtaattattatgttaaaaagtcaactattacaatttacaatgcattcaatacacaatttttcattaaaaa 38491309  T

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Target: scaffold0004 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 179
Target Start/End: Complemental strand, 335940 - 335863
Alignment:
Q  102 atttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaattt 179  Q
    ||||||||||||||| ||| |||| || | |||||||||||| |||| |||| ||| |||||||||||||||||||||    
T  335940 atttagtaattattcatttcaaaagttaattattataattttcaatgtattcgatacacaacttttcattaaaaattt 335863  T

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Target: scaffold0268 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 229
Target Start/End: Complemental strand, 20330 - 20214
Alignment:
Q  112 tattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttactattttaaatgcttaaagaatgttccgaag 211  Q
    |||||||||||||| || | ||||| |||||  |||||||| |||| ||||||||||| |||||| |||  |||| || |||||||||| |||   ||||    
T  20330 tattcttttaaaaagttaactattacaatttcaaatgcattaaatacacaacttttca-taaaaacttatcatttaaagtgcttaaagagtgtcatgaag 20232  T
Q  212 acactcgttaacatttct 229  Q
     |||||||||||||||||    
T  20231 gcactcgttaacatttct 20214  T

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Target: scaffold0119 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 1403 - 1502
Alignment:
Q  83 cactctttaagcatctctgatttagtaattattcttttaaaaaattgaatattataatttttaatgcattcaatatacaacttttcattaaaaatttact 182  Q
    |||||||||||||  ||  ||||| |||||||||||||||||| |  | ||||| |||||| | || ||| |||| | ||||||||||||||||||||||    
T  1403 cactctttaagcacttcatatttaataattattcttttaaaaagtcaactattacaattttcactgtatttaatacataacttttcattaaaaatttact 1502  T

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