View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13241_low_14 (Length: 390)

Name: NF13241_low_14
Description: NF13241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13241_low_14
NF13241_low_14
[»] chr2 (5 HSPs)
chr2 (16-380)||(8020624-8020988)
chr2 (27-104)||(22965011-22965088)
chr2 (27-104)||(22399511-22399588)
chr2 (330-385)||(22400494-22400550)
chr2 (330-385)||(22791940-22791996)
[»] chr3 (27 HSPs)
chr3 (184-369)||(28151610-28151795)
chr3 (245-369)||(17744491-17744615)
chr3 (245-369)||(19045811-19045935)
chr3 (198-369)||(28037413-28037584)
chr3 (24-104)||(28150946-28151026)
chr3 (199-369)||(11420963-11421133)
chr3 (227-369)||(28149970-28150112)
chr3 (103-191)||(28151276-28151364)
chr3 (244-369)||(27954347-27954471)
chr3 (226-322)||(27458885-27458981)
chr3 (273-369)||(28161925-28162021)
chr3 (244-363)||(8539262-8539381)
chr3 (31-99)||(28003202-28003270)
chr3 (273-369)||(28185968-28186064)
chr3 (244-369)||(27920262-27920389)
chr3 (227-336)||(27776525-27776634)
chr3 (292-369)||(28479860-28479937)
chr3 (292-369)||(28509043-28509120)
chr3 (16-54)||(27979500-27979538)
chr3 (227-292)||(28056547-28056612)
chr3 (227-292)||(28066972-28067037)
chr3 (22-94)||(26236438-26236510)
chr3 (106-157)||(28054960-28055011)
chr3 (106-157)||(28065385-28065436)
chr3 (105-157)||(8539704-8539756)
chr3 (109-157)||(28149203-28149251)
chr3 (163-191)||(28161470-28161498)
[»] scaffold0257 (2 HSPs)
scaffold0257 (226-366)||(19079-19219)
scaffold0257 (111-157)||(18626-18672)
[»] scaffold0922 (1 HSPs)
scaffold0922 (303-369)||(1819-1885)
[»] chr4 (2 HSPs)
chr4 (163-191)||(9328792-9328820)
chr4 (163-191)||(9382569-9382597)


Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 16 - 380
Target Start/End: Original strand, 8020624 - 8020988
Alignment:
Q  16 agtagcaacaatattaccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatttcttgtattct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020624 agtagcaacaatattaccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatttcttgtattct 8020723  T
Q  116 tttttacactttgtcaataccggaattgaattataccacaatattgacaggttagcgaaataagtgttgaagaaggtgacaaccaaagagcaatagcttc 215  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8020724 tttttacactttgtcagtaccggaattgaattataccacaatattgacaggttagcgaaataagtgttgaagaaggtgacaaccaaagagctatagcttc 8020823  T
Q  216 tacttcaatcgccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatct 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020824 tacttcaatcgccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatct 8020923  T
Q  316 ttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagttaaccttcttct 380  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8020924 ttggatcggttttcttttcttaagttatctcatcgcccttttcattttgaagttaaccttcttct 8020988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 22965011 - 22965088
Alignment:
Q  27 tattaccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatt 104  Q
    ||||||||||||||||| ||||||| |||||||| ||| ||| |||||| ||||||||||||||||||||||| ||||    
T  22965011 tattaccaacaaattcagaagtaatatgaaggccgtgtcaaattcacttcgatattcctctccaaatatatacttatt 22965088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 22399511 - 22399588
Alignment:
Q  27 tattaccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatt 104  Q
    ||||||||||||||||| ||||||| |||||||| ||| ||| ||||||  |||||||||||||||||||||| ||||    
T  22399511 tattaccaacaaattcagaagtaatatgaaggccgtgtcaaattcacttctatattcctctccaaatatatacttatt 22399588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 385
Target Start/End: Original strand, 22400494 - 22400550
Alignment:
Q  330 ttttcttaagttacctcatcgcccttttcattttgaagttaacct-tcttctctctc 385  Q
    |||||||| ||||||||||  ||||||| ||||||||||||| || |||||||||||    
T  22400494 ttttcttatgttacctcataacccttttgattttgaagttaaactctcttctctctc 22400550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 385
Target Start/End: Original strand, 22791940 - 22791996
Alignment:
Q  330 ttttcttaagttacctcatcgcccttttcattttgaagttaacct-tcttctctctc 385  Q
    |||||||| ||||||||||  ||||||| ||||||||||||| || |||||||||||    
T  22791940 ttttcttatgttacctcataacccttttgattttgaagttaaactctcttctctctc 22791996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 146; Significance: 8e-77; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 184 - 369
Target Start/End: Original strand, 28151610 - 28151795
Alignment:
Q  184 gaagaaggtgacaaccaaagagcaatagcttctacttcaatcgccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaacta 283  Q
    ||||||||||||||||||||||||||||||| |||| |||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28151610 gaagaaggtgacaaccaaagagcaatagcttatactccaattgacataacaaagcctgtaaccactcaagatgttgatgttgaaatctggcaggaaacta 28151709  T
Q  284 gtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 369  Q
    ||||||||||||| |||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||    
T  28151710 gtaacactaatgatgatcaaggtgaagaatctttggatcgcttttattttcttaagttacctcatcgccctttttattttgaagtt 28151795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 245 - 369
Target Start/End: Complemental strand, 17744615 - 17744491
Alignment:
Q  245 ccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacc 344  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||| || | |||| || ||||||||||||| |||| |||||||||||||||    
T  17744615 ccactcaagatgttgatgttgaaatctggcaggaaactagaaagactaatgatgaccaaggtaaaaaatctttggatcgattttattttcttaagttacc 17744516  T
Q  345 tcatcgcccttttcattttgaagtt 369  Q
    ||||||| |||||||||||||||||    
T  17744515 tcatcgctcttttcattttgaagtt 17744491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 245 - 369
Target Start/End: Complemental strand, 19045935 - 19045811
Alignment:
Q  245 ccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacc 344  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||| || | |||| || ||||||||||||| |||| |||||||||||||||    
T  19045935 ccactcaagatgttgatgttgaaatctggcaggaaactagaaagactaatgatgaccaaggtaaaaaatctttggatcgattttattttcttaagttacc 19045836  T
Q  345 tcatcgcccttttcattttgaagtt 369  Q
    ||||||| |||||||||||||||||    
T  19045835 tcatcgctcttttcattttgaagtt 19045811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 198 - 369
Target Start/End: Original strand, 28037413 - 28037584
Alignment:
Q  198 ccaaagagcaatagcttctacttcaatcgccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgac 297  Q
    ||||||||| ||||||||| |||||||  |||||||||||||| | |||||| ||||||||||| |  ||| |||||  ||||||||||||||||||||     
T  28037413 ccaaagagccatagcttctccttcaattaccataacaaagcctgttaccactgaagatgttgatctcaaaaactggcgcgaaactagtaacactaatgat 28037512  T
Q  298 gatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 369  Q
    | || |||| |||| |||||||||| || || |||||| ||||||||||||| |||||||||||||||||||    
T  28037513 ggtcaaggtaaagactctttggatcagtgttattttctaaagttacctcatcacccttttcattttgaagtt 28037584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 28150946 - 28151026
Alignment:
Q  24 caatattaccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatt 104  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28150946 caataataccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatt 28151026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 199 - 369
Target Start/End: Original strand, 11420963 - 11421133
Alignment:
Q  199 caaagagcaatagcttctacttcaatcgccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacg 298  Q
    |||| ||| ||||||||| ||  ||| |||||||||||||||   |||| |||||||||||||||| ||||||| ||||||||||||||  ||||||| |    
T  11420963 caaatagccatagcttctcctcaaattgccataacaaagcctgctaccattcaagatgttgatgttaaaatctgtcaggaaactagtaaggctaatgatg 11421062  T
Q  299 atcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 369  Q
    ||| |||||| || |||||||||| ||||| ||||||||||||||  |||| |||||||||||| ||||||    
T  11421063 atcaaggtgatgactctttggatcagttttattttcttaagttacgacatcacccttttcatttagaagtt 11421133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 227 - 369
Target Start/End: Original strand, 28149970 - 28150112
Alignment:
Q  227 ccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggtt 326  Q
    ||||||||| |||||| ||||||||||| ||| ||||| | | || |||||||||||||||||||||||| |||| ||||||||| |||| |||||  ||    
T  28149970 ccataacaaggcctcttaccactcaagaagttcatgttaataacttgcaggaaactagtaacactaatgatgatcaaggtgaagagtcttaggatcaatt 28150069  T
Q  327 ttcttttcttaagttacctcatcgcccttttcattttgaagtt 369  Q
    || ||||||||||||| |||||| |||||||||||||||||||    
T  28150070 ttattttcttaagttatctcatcacccttttcattttgaagtt 28150112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 103 - 191
Target Start/End: Original strand, 28151276 - 28151364
Alignment:
Q  103 tttcttgtattcttttttacactttgtcaataccggaattgaattataccacaatattgacaggttagcgaaataagtgttgaagaagg 191  Q
    ||||||||||||||||| ||||||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28151276 tttcttgtattctttttcacactttgtcagtacagaaattgaattatactacaatattgacaggttagcgaaataagtgttgaagaagg 28151364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 244 - 369
Target Start/End: Original strand, 27954347 - 27954471
Alignment:
Q  244 accactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttac 343  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||||||||||| |||| ||||||| | |||||||||  || || ||||| ||||||||    
T  27954347 accactcaatatgttgatgataaaatctggcaggaaactagtaacactaatgatgatcaaggtgaaaactctttggattagtgttgttttcataagttac 27954446  T
Q  344 ctcatcgcccttttcattttgaagtt 369  Q
    ||||||  ||||||||||||||||||    
T  27954447 ctcatc-accttttcattttgaagtt 27954471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 226 - 322
Target Start/End: Complemental strand, 27458981 - 27458885
Alignment:
Q  226 gccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatc 322  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| || ||||| || |||| ||||||||| ||||||||||    
T  27458981 gccataacaaagcctcttaccactcaagatgttgatgttaaaatctggcaggaaactagcaagactaaggatgatcaaggtgaagactctttggatc 27458885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 273 - 369
Target Start/End: Original strand, 28161925 - 28162021
Alignment:
Q  273 gcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 369  Q
    |||||||||||||||||||||||| |||| ||||||||| ||||||||||  |||| ||||||||||||| |||||| |||||||||||||||||||    
T  28161925 gcaggaaactagtaacactaatgatgatcaaggtgaagactctttggatcaattttattttcttaagttatctcatcacccttttcattttgaagtt 28162021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 244 - 363
Target Start/End: Complemental strand, 8539381 - 8539262
Alignment:
Q  244 accactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttac 343  Q
    ||||||||||||||||||||| || | ||||||||||||||||||||||||    ||| |||||||||||| ||||||| ||||| ||||||||||||||    
T  8539381 accactcaagatgttgatgttaaactttggcaggaaactagtaacactaatattaatcaaggtgaagaatccttggatcagttttattttcttaagttac 8539282  T
Q  344 ctcatcgcccttttcatttt 363  Q
    ||  || |||||||||||||    
T  8539281 cttgtcacccttttcatttt 8539262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 28003202 - 28003270
Alignment:
Q  31 accaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatac 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  28003202 accaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggataatcctctcccaatatatac 28003270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 273 - 369
Target Start/End: Original strand, 28185968 - 28186064
Alignment:
Q  273 gcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 369  Q
    ||||||||||||||||||| |||| |||| ||||||||| ||||||||||  |||| ||||||||||||| |||||| |||||||||||||||||||    
T  28185968 gcaggaaactagtaacactgatgatgatcaaggtgaagactctttggatcaattttattttcttaagttatctcatcacccttttcattttgaagtt 28186064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 244 - 369
Target Start/End: Original strand, 27920262 - 27920389
Alignment:
Q  244 accactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaag---t 340  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||||||||||| |||| ||||||| | |||||||||  || || ||||| ||||   |    
T  27920262 accactcaatatgttgatgataaaatctggcaggaaactagtaacactaatgatgatcaaggtgaaaactctttggattagtgttgttttcataagcaat 27920361  T
Q  341 tacctcatcgcccttttcattttgaagtt 369  Q
    |||||||||  ||||||||||||||||||    
T  27920362 tacctcatc-accttttcattttgaagtt 27920389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 227 - 336
Target Start/End: Original strand, 27776525 - 27776634
Alignment:
Q  227 ccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggtt 326  Q
    |||||||||||||||  || |||||||||||||||||||||| || ||||||||||||||| ||||||||  ||| ||||||| | ||||||||||  ||    
T  27776525 ccataacaaagcctcctactactcaagatgttgatgttgaaaacttgcaggaaactagtaagactaatgatcatcaaggtgaaaactctttggatcaatt 27776624  T
Q  327 ttcttttctt 336  Q
    || |||||||    
T  27776625 ttattttctt 27776634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 292 - 369
Target Start/End: Complemental strand, 28479937 - 28479860
Alignment:
Q  292 aatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 369  Q
    ||||| |||| ||||||||| ||||||||||  |||| ||||||||| |||||||||| |||||| ||||||||||||    
T  28479937 aatgatgatcaaggtgaagactctttggatcaattttattttcttaatttacctcatcaccctttgcattttgaagtt 28479860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 292 - 369
Target Start/End: Complemental strand, 28509120 - 28509043
Alignment:
Q  292 aatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 369  Q
    ||||| |||| ||||||||| ||||||||||  |||| ||||||||| |||||||||| |||||| ||||||||||||    
T  28509120 aatgatgatcaaggtgaagactctttggatcaattttattttcttaatttacctcatcaccctttgcattttgaagtt 28509043  T

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Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 27979500 - 27979538
Alignment:
Q  16 agtagcaacaatattaccaacaaattcaaaagtaatttg 54  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  27979500 agtagcaacaatattaccaacaaattcgaaagtaatttg 27979538  T

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Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 28056547 - 28056612
Alignment:
Q  227 ccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacacta 292  Q
    ||||||||| |||||| ||||||||||| ||| ||||| | | || ||||||||||||||||||||    
T  28056547 ccataacaaggcctcttaccactcaagaagttcatgttaataacttgcaggaaactagtaacacta 28056612  T

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Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 28066972 - 28067037
Alignment:
Q  227 ccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacacta 292  Q
    ||||||||| |||||| ||||||||||| ||| ||||| | | || ||||||||||||||||||||    
T  28066972 ccataacaaggcctcttaccactcaagaagttcatgttaataacttgcaggaaactagtaacacta 28067037  T

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Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 26236510 - 26236438
Alignment:
Q  22 aacaatattaccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaata 94  Q
    |||| ||||||||||||||| | |||||||||| || |||||| ||| || | |||| |||||||||||||||    
T  26236510 aacattattaccaacaaattaagaagtaatttgtagaccatgtaaaattcccatggaaattcctctccaaata 26236438  T

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Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 28054960 - 28055011
Alignment:
Q  106 cttgtattcttttttacactttgtcaataccggaattgaattataccacaat 157  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||    
T  28054960 cttgtattttttttaacactttgtcaatgcaggaattgaattatactacaat 28055011  T

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Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 28065385 - 28065436
Alignment:
Q  106 cttgtattcttttttacactttgtcaataccggaattgaattataccacaat 157  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||    
T  28065385 cttgtattttttttaacactttgtcaatgcaggaattgaattatactacaat 28065436  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 8539756 - 8539704
Alignment:
Q  105 tcttgtattcttttttacactttgtcaataccggaattgaattataccacaat 157  Q
    ||||||||||||||| |||||||  |||| | ||||||||||||||| |||||    
T  8539756 tcttgtattctttttaacacttttccaatgcaggaattgaattatactacaat 8539704  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 28149203 - 28149251
Alignment:
Q  109 gtattcttttttacactttgtcaataccggaattgaattataccacaat 157  Q
    ||||||||||  ||||||||||||| | ||||||||||||||| |||||    
T  28149203 gtattcttttgaacactttgtcaatgcaggaattgaattatactacaat 28149251  T

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Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 191
Target Start/End: Original strand, 28161470 - 28161498
Alignment:
Q  163 caggttagcgaaataagtgttgaagaagg 191  Q
    |||||||||||||||||||||||||||||    
T  28161470 caggttagcgaaataagtgttgaagaagg 28161498  T

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Target: scaffold0257 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 226 - 366
Target Start/End: Original strand, 19079 - 19219
Alignment:
Q  226 gccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggt 325  Q
    ||||||||||||||||| ||||||||||||||||||||| | | || ||||||||||||||||| || ||| |||| ||||||||| ||||||||||  |    
T  19079 gccataacaaagcctcttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaagactctttggatcaat 19178  T
Q  326 tttcttttcttaagttacctcatcgcccttttcattttgaa 366  Q
     || |||||||||||||||||||| ||||||||||||||||    
T  19179 attattttcttaagttacctcatcacccttttcattttgaa 19219  T

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Target: scaffold0257; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 18626 - 18672
Alignment:
Q  111 attcttttttacactttgtcaataccggaattgaattataccacaat 157  Q
    ||||||||| ||||||||||||| | ||||||||||||||| |||||    
T  18626 attctttttgacactttgtcaatgcaggaattgaattatactacaat 18672  T

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Target: scaffold0922 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 303 - 369
Target Start/End: Original strand, 1819 - 1885
Alignment:
Q  303 aggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 369  Q
    ||||||||| | |||  ||||||||| ||||||||||||||| |||| |||||||||||||||||||    
T  1819 aggtgaagagtatttcaatcggttttattttcttaagttaccacatcacccttttcattttgaagtt 1885  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 191
Target Start/End: Complemental strand, 9328820 - 9328792
Alignment:
Q  163 caggttagcgaaataagtgttgaagaagg 191  Q
    |||||||||||||||||||||||||||||    
T  9328820 caggttagcgaaataagtgttgaagaagg 9328792  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 191
Target Start/End: Complemental strand, 9382597 - 9382569
Alignment:
Q  163 caggttagcgaaataagtgttgaagaagg 191  Q
    |||||||||||||||||||||||||||||    
T  9382597 caggttagcgaaataagtgttgaagaagg 9382569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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