View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13241_low_18 (Length: 263)
Name: NF13241_low_18
Description: NF13241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13241_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 7224402 - 7224632
Alignment:
| Q |
19 |
attaagccatggaacaacatacttcagtgtcaaaattctctcacaagttaaatacaaaacaattataaaatcatttcataggcgaaggagactaaaatac |
118 |
Q |
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| T |
7224402 |
attaagccatggaacaacatacttcagtgtcaaaattctctcacaagttaaatacaaaacaattataaaatcatttcagaggcgaaggagactaaaatac |
7224501 |
T |
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| Q |
119 |
acgattcatcaaaccataaggataaaactagatgaaaaacatggtgatgaagtgatgaaacatactcctttttgaaaatctcaacaagaacttatataat |
218 |
Q |
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| T |
7224502 |
acgattcatcaaaccataaggataaaactagatgaaaaacatggtgatgaagtgatgaaacggactcctttttgaaaatctcaacaagaacttatataat |
7224601 |
T |
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| Q |
219 |
ggtctaaaccctccatccccagcacttgttt |
249 |
Q |
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| T |
7224602 |
ggtctaaaccctccatccccagcacttgttt |
7224632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 36 - 249
Target Start/End: Original strand, 2918900 - 2919113
Alignment:
| Q |
36 |
catacttcagtgtcaaaattctctcacaagttaaatacaaaacaattataaaatcatttcataggcgaaggagactaaaatacacgattcatcaaaccat |
135 |
Q |
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|||||||||||||| |||||||||||| ||| |||||||||| ||||||||||| ||||||||| |||||||||||||||||| | ||||||||| ||| |
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| T |
2918900 |
catacttcagtgtcgaaattctctcacgagtcaaatacaaaa--attataaaatcctttcataggggaaggagactaaaatacatggttcatcaaaacat |
2918997 |
T |
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| Q |
136 |
aaggat---aaaactagatgaaaaacatggtgatgaagtgatgaaacatactcctttttgaaaatctcaacaagaacttatataatggtctaaaccctcc |
232 |
Q |
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| T |
2918998 |
aagaaggtcaaaactagatgaaaaacatggtgatggagtg-tgaaacagactcctttatgaaaatctcaacaacaacttatagaatggtctaaacccccc |
2919096 |
T |
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| Q |
233 |
atccccagcacttgttt |
249 |
Q |
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| T |
2919097 |
atccccagcacttgttt |
2919113 |
T |
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