View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13241_low_2 (Length: 749)

Name: NF13241_low_2
Description: NF13241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13241_low_2
NF13241_low_2
[»] chr3 (3 HSPs)
chr3 (18-741)||(8697420-8698143)
chr3 (18-741)||(9049307-9050030)
chr3 (200-300)||(20669118-20669217)
[»] chr8 (2 HSPs)
chr8 (482-531)||(13411339-13411388)
chr8 (200-246)||(14482141-14482187)
[»] chr6 (4 HSPs)
chr6 (203-253)||(31964674-31964724)
chr6 (199-307)||(24836220-24836331)
chr6 (262-303)||(10031739-10031780)
chr6 (203-244)||(31968104-31968145)
[»] chr5 (2 HSPs)
chr5 (254-291)||(42573808-42573845)
chr5 (199-244)||(35960352-35960397)
[»] chr1 (1 HSPs)
chr1 (246-330)||(27140469-27140554)
[»] chr4 (4 HSPs)
chr4 (236-300)||(52259612-52259676)
chr4 (200-262)||(30338662-30338723)
chr4 (199-253)||(51044537-51044591)
chr4 (224-297)||(41701476-41701548)
[»] chr7 (3 HSPs)
chr7 (199-261)||(1417202-1417263)
chr7 (224-262)||(7453467-7453505)
chr7 (191-264)||(27121654-27121726)
[»] chr2 (2 HSPs)
chr2 (202-300)||(40837460-40837557)
chr2 (200-241)||(12215746-12215787)


Alignment Details
Target: chr3 (Bit Score: 680; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 680; E-Value: 0
Query Start/End: Original strand, 18 - 741
Target Start/End: Original strand, 8697420 - 8698143
Alignment:
Q  18 ctaactacttgaatcaacaaacattggtccaattgttcatttgttttttcttggtttcatacaagagaagtatttcaatttaaatcataacatttatctt 117  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8697420 ctaactacttggaccaacaaacattggtccaattgttcatttgtttttttttggtttcatacaagagaagtatttcaatttaaatcataacatttatctt 8697519  T
Q  118 tcaattatatgaaaacattaagccctgtttgaataaagacttatggcataagagttttaggaaataaactctttataactctttatgtataaactattcc 217  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8697520 tcaattatatgaaaacattaagccctgtttggataaagacttatggcataagagttttaggaaataaactctttataactctttatgtataaactattcc 8697619  T
Q  218 tacaataaaagatagaataaagtcaaatttgttttcctataagctgtttttctaagctatctaggagagcttaaggaaataagatggaaaaacttaaaga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8697620 tacaataaaagatagaataaagtcaaatttgttttcctataagctgtttttctaagctatctaggagagcttaaggaaataagatggaaaaacttaaaga 8697719  T
Q  318 catgtcataagctcgtccaaatagtctgataataagtgtgtatgttagtggataagcccaataagctaatccaaacagaccttaattactaccatagggg 417  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8697720 catgtcataagctcgcccaaatagtctgataataagtgtgtatgttagtggataagcccaataagctaatccaaacagaccttaattactaccatagggg 8697819  T
Q  418 aaaaagcacatagtaaaatctataacagtttgcaaataagataaaattcataccattttcattagagaaaaattcagcaggtgaactcttttgcctaata 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8697820 aaaaagcacatagtaaaatctataacagtttgcaaataagataaaattcataccattttcattagagaaaaattcagcaggtgaactcttttgcctaata 8697919  T
Q  518 agattggagcaattcctaacaccaattttagattgattagaatcatccgattccatagtgttaactccatcaaaagagccataaaaaccattaccagaac 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8697920 agattggagcaattcctaacaccaattttagattgattagaatcatctgattccatagtgttaactccaccaaaagagccataaaaaccattaccagaac 8698019  T
Q  618 catttgaaaagccttggtaagtcaactcagatccaccataagaataattaccattctgttgtgcaacagattcacctatttcttgtttcacaggtttcac 717  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8698020 catttgaaaagccttggtaaatcaactcagatccaccataagagtaattaccattctgttgtgcaacagattcacctatttcttgtttcacaggtttcac 8698119  T
Q  718 atcaaactcttgcatatattcttc 741  Q
    |||||||||||||| || ||||||    
T  8698120 atcaaactcttgcaaattttcttc 8698143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 680; E-Value: 0
Query Start/End: Original strand, 18 - 741
Target Start/End: Original strand, 9049307 - 9050030
Alignment:
Q  18 ctaactacttgaatcaacaaacattggtccaattgttcatttgttttttcttggtttcatacaagagaagtatttcaatttaaatcataacatttatctt 117  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9049307 ctaactacttggaccaacaaacattggtccaattgttcatttgtttttttttggtttcatacaagagaagtatttcaatttaaatcataacatttatctt 9049406  T
Q  118 tcaattatatgaaaacattaagccctgtttgaataaagacttatggcataagagttttaggaaataaactctttataactctttatgtataaactattcc 217  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9049407 tcaattatatgaaaacattaagccctgtttggataaagacttatggcataagagttttaggaaataaactctttataactctttatgtataaactattcc 9049506  T
Q  218 tacaataaaagatagaataaagtcaaatttgttttcctataagctgtttttctaagctatctaggagagcttaaggaaataagatggaaaaacttaaaga 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9049507 tacaataaaagatagaataaagtcaaatttgttttcctataagctgtttttctaagctatctaggagagcttaaggaaataagatggaaaaacttaaaga 9049606  T
Q  318 catgtcataagctcgtccaaatagtctgataataagtgtgtatgttagtggataagcccaataagctaatccaaacagaccttaattactaccatagggg 417  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9049607 catgtcataagctcgcccaaatagtctgataataagtgtgtatgttagtggataagcccaataagctaatccaaacagaccttaattactaccatagggg 9049706  T
Q  418 aaaaagcacatagtaaaatctataacagtttgcaaataagataaaattcataccattttcattagagaaaaattcagcaggtgaactcttttgcctaata 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9049707 aaaaagcacatagtaaaatctataacagtttgcaaataagataaaattcataccattttcattagagaaaaattcagcaggtgaactcttttgcctaata 9049806  T
Q  518 agattggagcaattcctaacaccaattttagattgattagaatcatccgattccatagtgttaactccatcaaaagagccataaaaaccattaccagaac 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9049807 agattggagcaattcctaacaccaattttagattgattagaatcatctgattccatagtgttaactccaccaaaagagccataaaaaccattaccagaac 9049906  T
Q  618 catttgaaaagccttggtaagtcaactcagatccaccataagaataattaccattctgttgtgcaacagattcacctatttcttgtttcacaggtttcac 717  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9049907 catttgaaaagccttggtaaatcaactcagatccaccataagagtaattaccattctgttgtgcaacagattcacctatttcttgtttcacaggtttcac 9050006  T
Q  718 atcaaactcttgcatatattcttc 741  Q
    |||||||||||||| || ||||||    
T  9050007 atcaaactcttgcaaattttcttc 9050030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 20669118 - 20669217
Alignment:
Q  200 ttatgtataaactattcctacaataaaagatagaataaagtcaaatttgttttcctataagctgtttttctaagctatctaggagagcttaaggaaataa 299  Q
    |||||||||| ||||| ||| || || | ||| |||||||||||| | ||| || |||||||||||||  |||||||||| |||||||||| | ||||||    
T  20669118 ttatgtataagctatttctataacaagatatacaataaagtcaaaat-gttgtcatataagctgttttcataagctatcttggagagcttatgtaaataa 20669216  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 482 - 531
Target Start/End: Original strand, 13411339 - 13411388
Alignment:
Q  482 gagaaaaattcagcaggtgaactcttttgcctaataagattggagcaatt 531  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  13411339 gagaaaaactcagcaggagaactcttttgcctaataagattggagcaatt 13411388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 14482141 - 14482187
Alignment:
Q  200 ttatgtataaactattcctacaataaaagatagaataaagtcaaatt 246  Q
    |||||||||||||||| ||| || |||||||| ||||||||||||||    
T  14482141 ttatgtataaactatttctataacaaaagataaaataaagtcaaatt 14482187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 31964724 - 31964674
Alignment:
Q  203 tgtataaactattcctacaataaaagatagaataaagtcaaatttgttttc 253  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |||||||    
T  31964724 tgtataaactattcctacaataaaagataaaataaagtcaaaactgttttc 31964674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 307
Target Start/End: Complemental strand, 24836331 - 24836220
Alignment:
Q  199 tttatgtataaactattcctacaataaaagatagaataaagtcaaatttgttttcctataagct----gtttttctaagctatctaggagagcttaagga 294  Q
    |||||||||||  |||| ||| || |||||||| |||||||||||| |||||||| ||||| ||    |||||  |||||||||  |||||||||| |||    
T  24836331 tttatgtataagttatttctataacaaaagataaaataaagtcaaa-ttgttttcgtataaactataagttttcgtaagctatcatggagagcttatgga 24836233  T
Q  295 aataagatggaaa 307  Q
    |||||| ||||||    
T  24836232 aataagctggaaa 24836220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 10031739 - 10031780
Alignment:
Q  262 tgtttttctaagctatctaggagagcttaaggaaataagatg 303  Q
    ||||||| |||||| ||| |||||||||||||||||||||||    
T  10031739 tgtttttataagctgtcttggagagcttaaggaaataagatg 10031780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 31968145 - 31968104
Alignment:
Q  203 tgtataaactattcctacaataaaagatagaataaagtcaaa 244  Q
    |||||||||||||||||||||| || ||| ||||||||||||    
T  31968145 tgtataaactattcctacaatagaaaataaaataaagtcaaa 31968104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 254 - 291
Target Start/End: Complemental strand, 42573845 - 42573808
Alignment:
Q  254 ctataagctgtttttctaagctatctaggagagcttaa 291  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  42573845 ctataagctgtttttataagctatctaggagagcttaa 42573808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 35960352 - 35960397
Alignment:
Q  199 tttatgtataaactattcctacaataaaagatagaataaagtcaaa 244  Q
    |||||| |||||||||| ||| ||||||||||| ||||||||||||    
T  35960352 tttatgcataaactatttctataataaaagataaaataaagtcaaa 35960397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 246 - 330
Target Start/End: Original strand, 27140469 - 27140554
Alignment:
Q  246 ttgttttcctataagctgtttttctaagctatctaggagagcttaaggaaataagatggaaa-aacttaaagacatgtcataagct 330  Q
    |||||||  |||||||||||||| |||||||||  |||||||||| | ||||||| || ||| ||||||  |||||||||||||||    
T  27140469 ttgtttttatataagctgtttttataagctatcatggagagcttatgcaaataagctgaaaacaacttatggacatgtcataagct 27140554  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 236 - 300
Target Start/End: Original strand, 52259612 - 52259676
Alignment:
Q  236 aaagtcaaatttgttttcctataagctgtttttctaagctatctaggagagcttaaggaaataag 300  Q
    |||||||| ||| ||| | |||||||||||||| |||||||||| |||||||||| | |||||||    
T  52259612 aaagtcaattttttttccgtataagctgtttttataagctatctgggagagcttatgaaaataag 52259676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 30338723 - 30338662
Alignment:
Q  200 ttatgtataaactattcctacaataaaagatagaataaagtcaaatttgttttcctataagct 262  Q
    |||||||||||||||| ||| || ||||||||||||||||| |||  ||||||| ||||||||    
T  30338723 ttatgtataaactatttctataacaaaagatagaataaagttaaa-ctgttttcatataagct 30338662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 51044591 - 51044537
Alignment:
Q  199 tttatgtataaactattcctacaataaaagatagaataaagtcaaatttgttttc 253  Q
    ||||||||||| ||||| ||| || |||||||| |||||||||||| ||||||||    
T  51044591 tttatgtataagctatttctataacaaaagataaaataaagtcaaacttgttttc 51044537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 297
Target Start/End: Complemental strand, 41701548 - 41701476
Alignment:
Q  224 aaaagatagaataaagtcaaatttgttttcctataagctgtttttctaagctatctaggagagcttaaggaaat 297  Q
    |||||||| |||||||||||||  |||||| |||||||||||||  ||||||||  |||||||| || ||||||    
T  41701548 aaaagataaaataaagtcaaatc-gttttcatataagctgttttaataagctatacaggagagcatatggaaat 41701476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 199 - 261
Target Start/End: Original strand, 1417202 - 1417263
Alignment:
Q  199 tttatgtataaactattcctacaataaaagatagaataaagtcaaatttgttttcctataagc 261  Q
    |||||||||||||||||  || || |||||||| |||||||||||| |||||||| |||||||    
T  1417202 tttatgtataaactatttatataacaaaagataaaataaagtcaaa-ttgttttcatataagc 1417263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 7453505 - 7453467
Alignment:
Q  224 aaaagatagaataaagtcaaatttgttttcctataagct 262  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  7453505 aaaagataaaataaagtcaaatttgttttcatataagct 7453467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 264
Target Start/End: Complemental strand, 27121726 - 27121654
Alignment:
Q  191 tataactctttatgtataaactattcctacaataaaagatagaataaagtcaaatttgttttcctataagctgt 264  Q
    ||||| || ||||||||||  |||| ||| |||||| |||| |||||||||||| |||||||| ||||||||||    
T  27121726 tataattccttatgtataagatatttctataataaatgataaaataaagtcaaa-ttgttttcatataagctgt 27121654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 202 - 300
Target Start/End: Complemental strand, 40837557 - 40837460
Alignment:
Q  202 atgtataaactattcctacaataaaagatagaataaagtcaaatttgttttcctataagctgtttttctaagctatctaggagagcttaaggaaataag 300  Q
    |||||||| ||||| ||| || |||||||| | |||||||||| |||||||| |||| | ||||||  |||||||||  | |||||||| |||||||||    
T  40837557 atgtataagctatttctataacaaaagataaattaaagtcaaa-ttgttttcatatatgttgttttaataagctatcatgtagagcttatggaaataag 40837460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 12215746 - 12215787
Alignment:
Q  200 ttatgtataaactattcctacaataaaagatagaataaagtc 241  Q
    |||||||||||||||| |||||| |||||||| |||||||||    
T  12215746 ttatgtataaactatttctacaacaaaagataaaataaagtc 12215787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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