View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13241_low_22 (Length: 236)
Name: NF13241_low_22
Description: NF13241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13241_low_22 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 41074519 - 41074742
Alignment:
| Q |
13 |
agcattttcttgtattcttgaataccacgtatacacattgacaagcatgaaatgttgtgtttccatattttgaaaaagcttatttagagtttatgtagac |
112 |
Q |
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| T |
41074519 |
agcatttgcttgtattcttgaataccacctatacacattgacaagcatgaaatgttgtgtttccatattttgaaaaagcttatttagagtttatgtagac |
41074618 |
T |
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| Q |
113 |
ttatcttatcacatatgtatccaaattaactatagaatacacttatgatatctcattaagacggttttagtttgagtctttcctagtggtgtgggattgc |
212 |
Q |
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| T |
41074619 |
ttatcttatcacatatgtatccaaattaactacagaatacacttatgatatctcattaagacggttttagtttgagtctttcctagtggtgtgggattgc |
41074718 |
T |
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| Q |
213 |
aaattgtcaatagcttcacctgtt |
236 |
Q |
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|||||||||||||||||||||||| |
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| T |
41074719 |
aaattgtcaatagcttcacctgtt |
41074742 |
T |
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