View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13241_low_23 (Length: 226)
Name: NF13241_low_23
Description: NF13241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13241_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 7224355 - 7224139
Alignment:
| Q |
1 |
aattcccaagttaaggaatattttgtttaatacagggacaatggttctgagaaggaatatcttgtgaagtggagagagcttccttatgatgaatgccatt |
100 |
Q |
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| T |
7224355 |
aattcccaagttaaggaatattttgtttaatacagggacaatggtgctgagaaggaatatcttgtgaagtggaaagagcttccttatgatgaatgccatt |
7224256 |
T |
|
| Q |
101 |
gggagcttgagtcagatatctcttcgttttaggcagaaatagagagattcaatatatttcgttctaggtctaggaagatttcttatagtaagcnnnnnnn |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7224255 |
gggagcttgagtcagatatctcttcgttttaggcagaaatagagagattcaatatatttggttctaggtctaggaagatttcttatagtaagcaaaaaaa |
7224156 |
T |
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| Q |
201 |
cagtgttagtgatgatg |
217 |
Q |
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||||||||||||||||| |
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| T |
7224155 |
cagtgttagtgatgatg |
7224139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 2918839 - 2918623
Alignment:
| Q |
1 |
aattcccaagttaaggaatattttgtttaatacagggacaatggttctgagaaggaatatcttgtgaagtggagagagcttccttatgatgaatgccatt |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2918839 |
aattcccaagttatggaatattttgtttaatacagggaccatggtgctgagaaggaatatcttgtgaagtggaaagagcttccttatgatgaatgccatt |
2918740 |
T |
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| Q |
101 |
gggagcttgagtcagatatctcttcgttttaggcagaaatagagagattcaatatatttcgttctaggtctaggaagatttcttatagtaagcnnnnnnn |
200 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2918739 |
gggagcttgagtcagatatctctttgtttcaggcagaaatagagagattcaatatatttcgttctaggtctaggaagatttcttattgtaagcaaaaagg |
2918640 |
T |
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| Q |
201 |
cagtgttagtgatgatg |
217 |
Q |
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| T |
2918639 |
cagtgttagtgatgatg |
2918623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 48 - 167
Target Start/End: Original strand, 49037919 - 49038038
Alignment:
| Q |
48 |
tgagaaggaatatcttgtgaagtggagagagcttccttatgatgaatgccattgggagcttgagtcagatatctcttcgttttaggcagaaatagagaga |
147 |
Q |
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||||| ||||||||| |||||||||| ||||||||| ||||||||||| ||||||| |||||| ||||| ||| | ||| || | |||||||| ||| |
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| T |
49037919 |
tgagagggaatatctggtgaagtggaaagagcttccatatgatgaatgttattgggaatctgagtctgatatttctgcatttcagccggaaatagaaaga |
49038018 |
T |
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| Q |
148 |
ttcaatatatttcgttctag |
167 |
Q |
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|| |||| |||||||||||| |
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| T |
49038019 |
tttaatagatttcgttctag |
49038038 |
T |
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