View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13241_low_24 (Length: 201)
Name: NF13241_low_24
Description: NF13241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13241_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 64; Significance: 3e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 41124960 - 41124872
Alignment:
| Q |
19 |
gttaggtaaaatatgagaaaaataaagttgtcatttctttaatannnnnnngtgtgtataccttctaatgttttggaggcctatacaca |
107 |
Q |
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| T |
41124960 |
gttaggtaaaatattagaaaaataaagttgtcatttctttaatatttttttgtgtgtataccttctaatgttttggaggcctatacaca |
41124872 |
T |
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Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 41124843 - 41124793
Alignment:
| Q |
136 |
aataattagtgaactagctagctagaggacatgcaataagattgtgatttt |
186 |
Q |
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| T |
41124843 |
aataattagtgaactagctagctagaggacatgcaataagattgtgatttt |
41124793 |
T |
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