View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13241_low_8 (Length: 554)
Name: NF13241_low_8
Description: NF13241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13241_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 94 - 549
Target Start/End: Complemental strand, 31790160 - 31789704
Alignment:
| Q |
94 |
ctgggataggcccaattatttacatgaaaatcaaccaacaccaacaccaagtggtttctaccatgaatatccacaatatatgatgccaatgcaacaacaa |
193 |
Q |
| |
|
|||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31790160 |
ctgggataggccaagtgatttacatgaaaatcaaccaacaccaacaccaagtggtttctaccatgaatatccacaatatatgatgccaatgcaacaacaa |
31790061 |
T |
|
| Q |
194 |
aacaacaatttttacagtttaacatcaaatatttccaccacagcagaaacaacattaggcagtgaagtttcactatcatcagtggcagcagcagcagaaa |
293 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31790060 |
aacaacaatttttacagtttcacatcaaatatttccaccacagcagcaacaacattaggcagtgaagtttcactatcatcagtggcagcagcagcagaaa |
31789961 |
T |
|
| Q |
294 |
atcacagagatcaagttctgatgagtaatccccctccttcagatgcaattccatttattgacttccttggagtaggagccacatgatcaaagttataaac |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31789960 |
atcacagagatcaagttctgatgagtaatccccctccttcagatgcaattccatttattgacttccttggagtaggagccacatgatcaaagttataaac |
31789861 |
T |
|
| Q |
394 |
taatcaaaaagctgcaatgcaaccc-nnnnnnnncccattgaagctcctcaatataggtgtggtccaacattacctaaaaaccattcgaggtaaacagaa |
492 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31789860 |
taatcaaaaagctgcaatgcaacccttttttttttccattgaagctcctcaatataggtgtggtccaacattacctaaaaaccattcgaggtaaacagaa |
31789761 |
T |
|
| Q |
493 |
aggatagttgctctactttggtcactgtgttacttgcgtcatttctgttcatctcac |
549 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31789760 |
aggatagttgctctactttggtcactgtgttacttgcgtcatttctgttcatatcac |
31789704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University