View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13242_high_12 (Length: 265)
Name: NF13242_high_12
Description: NF13242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13242_high_12 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 11712512 - 11712770
Alignment:
| Q |
17 |
aactagaacagtataataataaaataaacaaaacaagtttcacaaatcatagatatggaacgtgaaatgaatat--gaataataataggtaggatgtttg |
114 |
Q |
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| T |
11712512 |
aactagaacagtataataataaaataaacaaaacaagtttcacaaatcatggatatggaacgtgaaatgaatatatgaatgataataggtaggatgtttg |
11712611 |
T |
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| Q |
115 |
tatttttcttctcttcttggtagaagcaaaacagtgtttttagcttcttaaaaaagtaatactatgttggatgtttgtatttat--------cttcttgt |
206 |
Q |
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| T |
11712612 |
tatttttcttctcttcttggtaaaagcaaaacagtgtttttagcttcttaaaaaagtaatactatgttggatgtttgtatttatcttcttgccttcttgt |
11712711 |
T |
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| Q |
207 |
tgttgaaagtggtgaaaattagagcttggaagctagtgaaaagttggaaaaagatttgt |
265 |
Q |
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| T |
11712712 |
tgttgaaagtggtgaaaattagagcttggaagctagtgaaaagttggaaaaagatttgt |
11712770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 12063895 - 12063995
Alignment:
| Q |
24 |
acagtataataataaaataaacaaaacaagttt--cacaaatcatagatatggaacgtgaaatgaatatgaat----aataataggtaggatgtttgtat |
117 |
Q |
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| T |
12063895 |
acagtataataataaaacaaacaatacaagtttttcacaaatcatagatatggaacgtgaaatgaatatcaatgatatataataggtaggatgtttgtat |
12063994 |
T |
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| Q |
118 |
t |
118 |
Q |
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| T |
12063995 |
t |
12063995 |
T |
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