View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13242_high_15 (Length: 209)

Name: NF13242_high_15
Description: NF13242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13242_high_15
NF13242_high_15
[»] chr7 (9 HSPs)
chr7 (3-209)||(39985717-39985923)
chr7 (3-205)||(8017304-8017506)
chr7 (6-205)||(8102742-8102941)
chr7 (82-209)||(8659434-8659561)
chr7 (139-206)||(8636370-8636437)
chr7 (153-208)||(8581772-8581827)
chr7 (84-203)||(8628609-8628728)
chr7 (153-203)||(8570388-8570438)
chr7 (139-209)||(8667490-8667560)
[»] chr2 (14 HSPs)
chr2 (6-209)||(17716587-17716784)
chr2 (7-209)||(17717849-17718048)
chr2 (3-208)||(17666580-17666779)
chr2 (7-209)||(17621846-17622042)
chr2 (54-209)||(17705680-17705835)
chr2 (3-208)||(17647926-17648137)
chr2 (7-128)||(17703944-17704059)
chr2 (162-209)||(17704105-17704152)
chr2 (82-209)||(16657487-16657614)
chr2 (82-209)||(16661962-16662089)
chr2 (81-112)||(43625580-43625611)
chr2 (82-115)||(273286-273319)
chr2 (84-205)||(12245378-12245499)
chr2 (3-48)||(16657408-16657453)
[»] chr4 (4 HSPs)
chr4 (9-209)||(23596482-23596682)
chr4 (90-209)||(23587711-23587830)
chr4 (96-208)||(54396495-54396607)
chr4 (141-205)||(9335920-9335984)
[»] chr1 (2 HSPs)
chr1 (82-209)||(4678528-4678655)
chr1 (3-48)||(34466684-34466729)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 39985923 - 39985717
Alignment:
Q  3 atcaatgagcccactgctgcagccattgcttatggtcttgacaagaaggcaaccagtgttggagagaagaatgtcttgatctttgaccttggtggtggta 102  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39985923 atcaatgagcccactgctgctgccattgcttatggtcttgacaagaaagcaaccagtgttggagagaagaatgtcttgatctttgaccttggtggtggta 39985824  T
Q  103 cttttgatgtctctttgctaactattgaagagggtatctttgaggtgaaagccacagctggagacacccatcttggaggtgaggattttgataacagaat 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  39985823 cttttgatgtctctttgctaactattgaagagggtatctttgaggtgaaagccacagccggagacacccatcttggaggtgaggattttgacaacagaat 39985724  T
Q  203 ggtgaac 209  Q
    |||||||    
T  39985723 ggtgaac 39985717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 205
Target Start/End: Original strand, 8017304 - 8017506
Alignment:
Q  3 atcaatgagcccactgctgcagccattgcttatggtcttgacaagaaggcaaccagtgttggagagaagaatgtcttgatctttgaccttggtggtggta 102  Q
    ||||| ||||| || |||||||| ||||| || || |||||||| ||||| || |||||||| ||||||||||| |||||||||||| | || |||||||    
T  8017304 atcaacgagccaacagctgcagctattgcgtacggacttgacaaaaaggctacaagtgttggcgagaagaatgtgttgatctttgacttgggaggtggta 8017403  T
Q  103 cttttgatgtctctttgctaactattgaagagggtatctttgaggtgaaagccacagctggagacacccatcttggaggtgaggattttgataacagaat 202  Q
    |||||||||| ||| | || ||||||||||||||||| ||||| || || || || ||||| || ||||||||||| ||||| |||||||| ||||||||    
T  8017404 cttttgatgtgtctcttcttactattgaagagggtatttttgaagttaaggctactgctggtgatacccatcttggtggtgaagattttgacaacagaat 8017503  T
Q  203 ggt 205  Q
    |||    
T  8017504 ggt 8017506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 205
Target Start/End: Complemental strand, 8102941 - 8102742
Alignment:
Q  6 aatgagcccactgctgcagccattgcttatggtcttgacaagaaggcaaccagtgttggagagaagaatgtcttgatctttgaccttggtggtggtactt 105  Q
    |||||||| |||||||| || ||||| || ||||||||||| ||||| || |||||||| |||||||| || |||||||||||  | |||||||||||||    
T  8102941 aatgagccaactgctgctgctattgcctacggtcttgacaaaaaggcgacaagtgttggtgagaagaacgtgttgatctttgatttgggtggtggtactt 8102842  T
Q  106 ttgatgtctctttgctaactattgaagagggtatctttgaggtgaaagccacagctggagacacccatcttggaggtgaggattttgataacagaatggt 205  Q
    ||||||| ||  | || ||||||||||||||||| ||||| || || || || || || || ||||||||||| ||||| ||||||||||||||||||||    
T  8102841 ttgatgtgtcacttcttactattgaagagggtatatttgaagttaaggctactgcaggtgatacccatcttggtggtgaagattttgataacagaatggt 8102742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 209
Target Start/End: Complemental strand, 8659561 - 8659434
Alignment:
Q  82 tctttgaccttggtggtggtacttttgatgtctctttgctaactattgaagaggg-tatctttgaggtgaaagccacagctggagacacccatcttggag 180  Q
    ||||||| ||||||||||||||||||||||| ||| | || || || |||| | | | ||||||| || ||||||||  ||||| |||| || |||||||    
T  8659561 tctttgatcttggtggtggtacttttgatgtgtctatccttacaat-gaagggtgatgtctttgaagtaaaagccacttctggaaacactcaccttggag 8659463  T
Q  181 gtgaggattttgataacagaatggtgaac 209  Q
    | ||||| ||||||| |||||||||||||    
T  8659462 gagaggactttgatagcagaatggtgaac 8659434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 8636370 - 8636437
Alignment:
Q  139 tctttgaggtgaaagccacagctggagacacccatcttggaggtgaggattttgataacagaatggtg 206  Q
    ||||||| || |||||||| || |||||||| || |||||||| ||||| ||||||||||||||||||    
T  8636370 tctttgaagttaaagccactgccggagacacacaccttggaggagaggactttgataacagaatggtg 8636437  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 8581827 - 8581772
Alignment:
Q  153 gccacagctggagacacccatcttggaggtgaggattttgataacagaatggtgaa 208  Q
    ||||| ||||||||||| || || ||||| || |||||||||||||||||||||||    
T  8581827 gccactgctggagacactcacctgggaggggaagattttgataacagaatggtgaa 8581772  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 203
Target Start/End: Complemental strand, 8628728 - 8628609
Alignment:
Q  84 tttgaccttggtggtggtacttttgatgtctctttgctaactattgaagagggtatctttgaggtgaaagccacagctggagacacccatcttggaggtg 183  Q
    ||||| ||||||||||| ||||||||||| ||| | || || ||| |||  | | ||||||| || |||||||| |||||| | || || ||||| || |    
T  8628728 tttgatcttggtggtgggacttttgatgtgtctctcctcacaattaaaggtgatgtctttgaagttaaagccactgctggaaatactcaccttggtggag 8628629  T
Q  184 aggattttgataacagaatg 203  Q
    |||| |||||||||||||||    
T  8628628 aggactttgataacagaatg 8628609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 8570438 - 8570388
Alignment:
Q  153 gccacagctggagacacccatcttggaggtgaggattttgataacagaatg 203  Q
    ||||| ||||||||||| || || |||||||| ||||||||||||||||||    
T  8570438 gccactgctggagacactcacctgggaggtgaagattttgataacagaatg 8570388  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 8667560 - 8667490
Alignment:
Q  139 tctttgaggtgaaagccacagctggagacacccatcttggaggtgaggattttgataacagaatggtgaac 209  Q
    ||||||| ||||||||||| || ||| |||| || ||||| || ||||| || ||||||||||||||||||    
T  8667560 tctttgaagtgaaagccactgcaggaaacactcaccttgggggcgaggacttcgataacagaatggtgaac 8667490  T

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Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 6 - 209
Target Start/End: Original strand, 17716587 - 17716784
Alignment:
Q  6 aatgagcccactgctgcagccattgcttatggtcttgacaagaaggcaaccagtgttggagagaagaatgtcttgatctttgaccttggtggtggtactt 105  Q
    ||||||||||||||||||||||||||||||||| |||||| ||      |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17716587 aatgagcccactgctgcagccattgcttatggttttgacacga------ccagcgttggagagaagaatgtcttgatctttgaccttggtggtggtactt 17716680  T
Q  106 ttgatgtctctttgctaactattgaagagggtatctttgaggtgaaagccacagctggagacacccatcttggaggtgaggattttgataacagaatggt 205  Q
    ||||||||||||||||||||||||||||| ||| |||| |||| ||||| ||||| |||||| ||||||||||||||||||||||| |||||||||||||    
T  17716681 ttgatgtctctttgctaactattgaagagtgtaactttcaggttaaagctacagccggagacgcccatcttggaggtgaggattttaataacagaatggt 17716780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 7 - 209
Target Start/End: Original strand, 17717849 - 17718048
Alignment:
Q  7 atgagcccactgctgcagccattgcttatggtcttgacaagaaggcaaccagtgttggagagaagaatgtcttgatctttgaccttggtggtggtacttt 106  Q
    |||||||||||||||||||||||||||||||| |||||| ||      |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17717849 atgagcccactgctgcagccattgcttatggttttgacacga------ccagcgttggagagaagaatgtcttgatctttgaccttggtggtggtacttt 17717942  T
Q  107 tgatgtctctttgcta---actattgaagagggtatctttgaggtgaaagccacagctggagacacccatcttggaggtgaggattttgataacagaatg 203  Q
    ||||||||||||||||   |||||||||||| ||| |||| |||| ||||| ||||| |||||| ||||||||||||||||||||||| |||||||||||    
T  17717943 tgatgtctctttgctaactactattgaagagtgtaactttcaggttaaagctacagccggagacgcccatcttggaggtgaggattttaataacagaatg 17718042  T

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Target: chr2; HSP #3
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 3 - 208
Target Start/End: Original strand, 17666580 - 17666779
Alignment:
Q  3 atcaatgagcccactgctgcagccattgcttatggtcttgacaagaaggcaaccagtgttggagagaagaatgtcttgatctttgaccttggtggtggta 102  Q
    ||||||||||||||| |||||||||||||||||||| |||||| ||      ||||  |||||||||||||||||||||||||||||||| | |||||||    
T  17666580 atcaatgagcccactcctgcagccattgcttatggttttgacacga------ccagctttggagagaagaatgtcttgatctttgacctttgcggtggta 17666673  T
Q  103 cttttgatgtctctttgctaactattgaagagggtatctttgaggtgaaagccacagctggagacacccatcttggaggtgaggattttgataacagaat 202  Q
    |||||||||||| ||||||||||||||||||||||||| ||| ||| ||||| ||| | |||||| ||||||||||||||||||||||| ||||||||||    
T  17666674 cttttgatgtctgtttgctaactattgaagagggtatcattggggttaaagctacaaccggagacccccatcttggaggtgaggattttaataacagaat 17666773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 7 - 209
Target Start/End: Original strand, 17621846 - 17622042
Alignment:
Q  7 atgagcccactgctgcagccattgcttatggtcttgacaagaaggcaaccagtgttggagagaagaatgtcttgatctttgaccttggtggtggtacttt 106  Q
    |||||||||||||||||||||||||||||||| |||||| ||      |||| |||||||||||||||||||| |||||||||||||||||||| |||||    
T  17621846 atgagcccactgctgcagccattgcttatggttttgacatga------ccagcgttggagagaagaatgtcttaatctttgaccttggtggtgggacttt 17621939  T
Q  107 tgatgtctctttgctaactattgaagagggtatctttgaggtgaaagccacagctggagacacccatcttggaggtgaggattttgataacagaatggtg 206  Q
    ||||||||||||||||||| |||||||| ||  | ||||||| ||||  | | | |||||||||||||||||||||||||||||| ||||||||||||||    
T  17621940 tgatgtctctttgctaacttttgaagagagtgacgttgaggttaaagttatatccggagacacccatcttggaggtgaggattttaataacagaatggtg 17622039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 54 - 209
Target Start/End: Original strand, 17705680 - 17705835
Alignment:
Q  54 accagtgttggagagaagaatgtcttgatctttgaccttggtggtggtacttttgatgtctctttgctaactattgaagagggtatctttgaggtgaaag 153  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||| |||||||| || || ||||||| ||||    
T  17705680 accagcgttggagagaagaatgtcttaatctttgaccttggtggtgggacttttgatgcctctttgctaacttttgaagagagtgtcgttgaggttaaag 17705779  T
Q  154 ccacagctggagacacccatcttggaggtgaggattttgataacagaatggtgaac 209  Q
    | | | | |||||||||||||||||||||||||||||| |||||||||||||||||    
T  17705780 ctatatccggagacacccatcttggaggtgaggattttaataacagaatggtgaac 17705835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 3 - 208
Target Start/End: Original strand, 17647926 - 17648137
Alignment:
Q  3 atcaatgagcccactgctgcagccattgcttatggtcttgacaagaaggcaaccagtgttggagagaagaatgtcttgatctttgaccttggtggtggta 102  Q
    ||||| ||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17647926 atcaaggagcccattgctgcagccattgcttatgatcttgacacgaaggcaaccagtgttggagagaagaatgtcttgatctttgaccttggcggtggta 17648025  T
Q  103 cttttgatgtctctttgctaacta---ttgaag---agggtatctttgaggtgaaagccacagctggagacacccatcttggaggtgaggattttgataa 196  Q
    ||||||| |||||| || |||  |    |||||     ||  || || |||| ||||| | | | |||||||||||||||||||||||||||||| ||||    
T  17648026 cttttgacgtctctatgataaagaaatgtgaaggatgtggcttcattaaggttaaagctatatccggagacacccatcttggaggtgaggattttaataa 17648125  T
Q  197 cagaatggtgaa 208  Q
    ||||||||||||    
T  17648126 cagaatggtgaa 17648137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 17703944 - 17704059
Alignment:
Q  7 atgagcccactgctgcagccattgcttatggtcttgacaagaaggcaaccagtgttggagagaagaatgtcttgatctttgaccttggtggtggtacttt 106  Q
    |||||||||||||| ||||||||||||||| |||||| |      ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  17703944 atgagcccactgcttcagccattgcttatgttcttgaaa------caaccagtgttggagagaaaaatgtcttgatctttgaccttggcggtggtacttt 17704037  T
Q  107 tgatgtctctttgctaactatt 128  Q
    ||||||||||||||||||||||    
T  17704038 tgatgtctctttgctaactatt 17704059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 162 - 209
Target Start/End: Original strand, 17704105 - 17704152
Alignment:
Q  162 ggagacacccatcttggaggtgaggattttgataacagaatggtgaac 209  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||    
T  17704105 ggagacccccatcttggaggtgaggattttaataacagaatggtgaac 17704152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 209
Target Start/End: Original strand, 16657487 - 16657614
Alignment:
Q  82 tctttgaccttggtggtggtacttttgatgtctctttgctaactattgaagagggtatctttgaggtgaaagccacagctggagacacccatcttggagg 181  Q
    ||||||||||||| ||||||||||||||||| ||| | || || ||| | |  | | | |||||||| |||||||| || ||| |||| || ||||| ||    
T  16657487 tctttgaccttggcggtggtacttttgatgtgtctatccttacaattaagggtgatgtttttgaggtaaaagccactgccggaaacactcaccttggggg 16657586  T
Q  182 tgaggattttgataacagaatggtgaac 209  Q
     ||||| ||||||||||||| |||||||    
T  16657587 agaggactttgataacagaacggtgaac 16657614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 209
Target Start/End: Original strand, 16661962 - 16662089
Alignment:
Q  82 tctttgaccttggtggtggtacttttgatgtctctttgctaactattgaagagggtatctttgaggtgaaagccacagctggagacacccatcttggagg 181  Q
    ||||||| ||||||||||| ||||||||||| ||| | || || ||| |||  | | ||||||| || ||||||||  ||||| |||| || || || ||    
T  16661962 tctttgatcttggtggtgggacttttgatgtgtctctcctcacaattaaaggtgatgtctttgaagttaaagccacttctggaaacactcacctcggggg 16662061  T
Q  182 tgaggattttgataacagaatggtgaac 209  Q
     ||||| ||||||||||||||| |||||    
T  16662062 agaggactttgataacagaatgttgaac 16662089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 112
Target Start/End: Complemental strand, 43625611 - 43625580
Alignment:
Q  81 atctttgaccttggtggtggtacttttgatgt 112  Q
    ||||||||||||||||||||||||||||||||    
T  43625611 atctttgaccttggtggtggtacttttgatgt 43625580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 273286 - 273319
Alignment:
Q  82 tctttgaccttggtggtggtacttttgatgtctc 115  Q
    ||||||||||||| ||||||||||||||||||||    
T  273286 tctttgaccttggaggtggtacttttgatgtctc 273319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 205
Target Start/End: Original strand, 12245378 - 12245499
Alignment:
Q  84 tttgaccttggtggtggtacttttgatgtctctttgctaactattgaagagggtatctttgaggtgaaagccacagctggagacacccatcttggaggtg 183  Q
    ||||| ||||||||||| |||||||| || ||| | ||||||||| | ||    |||||  | || || ||||| |||||| |||| || |||||||| |    
T  12245378 tttgatcttggtggtggcacttttgacgtttctatcctaactattaaggataacatcttccaagttaaggccactgctggaaacactcaccttggaggag 12245477  T
Q  184 aggattttgataacagaatggt 205  Q
    ||||||||||||| ||||||||    
T  12245478 aggattttgataatagaatggt 12245499  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 16657408 - 16657453
Alignment:
Q  3 atcaatgagcccactgctgcagccattgcttatggtcttgacaaga 48  Q
    |||||||| || ||||||||||| ||||| ||||||||||||||||    
T  16657408 atcaatgaacctactgctgcagctattgcatatggtcttgacaaga 16657453  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 23596482 - 23596682
Alignment:
Q  9 gagcccactgctgcagccattgcttatggtcttgacaagaaggcaaccagtgttggagagaagaatgtcttgatctttgaccttggtggtggtacttttg 108  Q
    |||||||||||||| || ||||||||||||||||| ||||| || || |||  ||| |||||||| ||  | || || || ||||||||||| |||||||    
T  23596482 gagcccactgctgccgctattgcttatggtcttgataagaaagctacaagtactggtgagaagaacgttcttattttcgatcttggtggtggaacttttg 23596581  T
Q  109 atgtctctttgctaactattgaagagggtatctttgaggtgaaagccacagctggagacacccatcttggaggtgaggattttgataacagaatggtgaa 208  Q
    |||| ||  | || |||||||| || |||||||||||||||||||| |||||||| || || ||| | |||||||| |||||||||||||| ||||||||    
T  23596582 atgtttcacttcttactattgaggaaggtatctttgaggtgaaagctacagctggtgatacacatttgggaggtgaagattttgataacaggatggtgaa 23596681  T
Q  209 c 209  Q
    |    
T  23596682 c 23596682  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 90 - 209
Target Start/End: Original strand, 23587711 - 23587830
Alignment:
Q  90 cttggtggtggtacttttgatgtctctttgctaactattgaagagggtatctttgaggtgaaagccacagctggagacacccatcttggaggtgaggatt 189  Q
    ||||||||||| ||||||||||| ||  | || |||||||| || |||||||||||||| ||||| |||||||| || || ||| | |||||||| ||||    
T  23587711 cttggtggtggaacttttgatgtttccctacttactattgaggaaggtatctttgaggtcaaagctacagctggtgatacacatttgggaggtgaagatt 23587810  T
Q  190 ttgataacagaatggtgaac 209  Q
    |||||||||| |||||||||    
T  23587811 ttgataacaggatggtgaac 23587830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 54396607 - 54396495
Alignment:
Q  96 ggtggtacttttgatgtctctttgctaactattgaagagggtatctttgaggtgaaagccacagctggagacacccatcttggaggtgaggattttgata 195  Q
    ||||| ||||| ||||| ||| | || ||||||||||| || ||||| || |||||||| || ||||| || || |||||||| ||||| ||||||||||    
T  54396607 ggtggaactttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgatactcatcttggtggtgaagattttgata 54396508  T
Q  196 acagaatggtgaa 208  Q
    |||||||||||||    
T  54396507 acagaatggtgaa 54396495  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 9335920 - 9335984
Alignment:
Q  141 tttgaggtgaaagccacagctggagacacccatcttggaggtgaggattttgataacagaatggt 205  Q
    ||||| || |||||||| || ||| |||| || |||||||| ||||| |||||||||||||||||    
T  9335920 tttgaagtaaaagccaccgcaggaaacacgcaccttggaggcgaggactttgataacagaatggt 9335984  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 82 - 209
Target Start/End: Original strand, 4678528 - 4678655
Alignment:
Q  82 tctttgaccttggtggtggtacttttgatgtctctttgctaactattgaagagggtatctttgaggtgaaagccacagctggagacacccatcttggagg 181  Q
    ||||||||||||||||||||||||||||||| ||| | || |  ||  | |  ||| ||||||| || |||||||| |||||| |||| || || || ||    
T  4678528 tctttgaccttggtggtggtacttttgatgtgtctatccttaaaatcaagggtggtgtctttgaagtaaaagccactgctggaaacactcacctaggtgg 4678627  T
Q  182 tgaggattttgataacagaatggtgaac 209  Q
     ||||| |||||||||||||||||||||    
T  4678628 agaggactttgataacagaatggtgaac 4678655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 34466684 - 34466729
Alignment:
Q  3 atcaatgagcccactgctgcagccattgcttatggtcttgacaaga 48  Q
    |||||||| |||||||||||||| ||||| ||||| ||||||||||    
T  34466684 atcaatgaacccactgctgcagctattgcatatggacttgacaaga 34466729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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