View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13242_high_3 (Length: 463)
Name: NF13242_high_3
Description: NF13242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13242_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 20 - 451
Target Start/End: Complemental strand, 42164047 - 42163611
Alignment:
| Q |
20 |
ataaatgggttgaatgttgcggtatgagggagagactcttacaatatggtcaactaatgttctaataatgatataaagatatgtgctcactatcatttta |
119 |
Q |
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| T |
42164047 |
ataaatgggttgaatgttgcggtatgagggagagactcttacaatatggtcaactaatgttctaatcatgatataaagatatgttctcactatcatgtta |
42163948 |
T |
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| Q |
120 |
gtatcatatgatggctagaattggattaacctatggtggagtgaacatatagaaa-----acaaaacaataacaagatttttgcttcattaagtcatttg |
214 |
Q |
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| T |
42163947 |
gtatcatatgatggctagaattggattaacctatggtggagtgaacatatagaaagaaaaaaaaaacaataacaagatttttgcttcattaagtcatttg |
42163848 |
T |
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| Q |
215 |
ttaatcatgtttaatgatttggagtctcttttttgacaggtgagagaactggaaacaaatcccctgttcaattctgggcgtggatctgctttgacagcaa |
314 |
Q |
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| T |
42163847 |
ttaatcatgtttaatgatttggagtctcttttttgacaggtgagagaactggaaacaaatcccctgttcaattctgggcgtggatctgctttgacagcaa |
42163748 |
T |
|
| Q |
315 |
aaggaacagttgaaatggaggctagcatcatggatggtacaaagagaagatgtggtgctgtatctggtgttaccaccgtgaaaaaccctgtctcacttgc |
414 |
Q |
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| T |
42163747 |
aaggaacagttgaaatggaggctagcataatggatggtacaaagagaagatgtggtgctgtatctggtgttaccaccgtgaaaaaccctgtctcacttgc |
42163648 |
T |
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| Q |
415 |
tcgccttgtcatggaaaagtcccctcattcataccta |
451 |
Q |
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| T |
42163647 |
tcgccttgtcatggaaaagtcccctcattcataccta |
42163611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 252 - 372
Target Start/End: Complemental strand, 5480776 - 5480656
Alignment:
| Q |
252 |
aggtgagagaactggaaacaaatcccctgttcaattctgggcgtggatctgctttgacagcaaaaggaacagttgaaatggaggctagcatcatggatgg |
351 |
Q |
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| T |
5480776 |
aggtgagggaattggaaacggatccactattcaattcgggtcgtggatctgccctgacggaaaaaggaacggtggaaatggaggctagcataatggatgg |
5480677 |
T |
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| Q |
352 |
tacaaagagaagatgtggtgc |
372 |
Q |
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|||| ||| |||| ||||| |
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| T |
5480676 |
accaaaaagacgatgcggtgc |
5480656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 281 - 450
Target Start/End: Original strand, 47170573 - 47170742
Alignment:
| Q |
281 |
ttcaattctgggcgtggatctgctttgacagcaaaaggaacagttgaaatggaggctagcatcatggatggtacaaagagaagatgtggtgctgtatctg |
380 |
Q |
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| T |
47170573 |
ttcaattctggccgtggatctgctctgacagcaaaaggaacggtggaaatggaggctagtatcatggatggtaccaagagaagatgtggtgctgtatctg |
47170672 |
T |
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| Q |
381 |
gtgttaccaccgtgaaaaaccctgtctcacttgctcgccttgtcatggaaaagtcccctcattcatacct |
450 |
Q |
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||||| ||||||||||||| || |||| |||||||| |||||||||||||| ||||||||||| ||||| |
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| T |
47170673 |
gtgtttccaccgtgaaaaatccaatctctcttgctcgtcttgtcatggaaaaatcccctcattcctacct |
47170742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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