View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13242_high_4 (Length: 453)
Name: NF13242_high_4
Description: NF13242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13242_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 6316329 - 6316767
Alignment:
| Q |
1 |
aatactttgtgtaaagctagttcctccatcatactaaatacacaaaatggacattacactcaaggcagaggcatgaaatcaacacataaatcacaattaa |
100 |
Q |
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| T |
6316329 |
aatactttgtgtaaagctagttcctccatcatactaaatacacaaaatggacattacactcaaggcagaggcatgaaatcaacacataaatcacaattaa |
6316428 |
T |
|
| Q |
101 |
aatgatttatccaaccatattagttaaaaaatgagccaccgttttgtacatatcttgcaacataaggttgtttattaccgatggttttattagttatcta |
200 |
Q |
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| T |
6316429 |
aatgatttatccaaccatattagttaaaaaatgagccaccgttttgtacatatcttgcaacataaggttgtttattaccgatggttttattagttatcta |
6316528 |
T |
|
| Q |
201 |
cattcagatctctgctggaaactaaagattcaaagagtaagagtatggatatatctatcaatcatcacccaccaaatcaaacagagatatcatatcagac |
300 |
Q |
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| T |
6316529 |
cattcagatctctgctggaaactaaagattcaaagagtaagagtatggatatatctatcaatcatcacccaccaaatcaagcagagatatcatatcagac |
6316628 |
T |
|
| Q |
301 |
tttataaataggaaactaaagatcaatgcaaatagagaaaaataaccatattcactgccgaaaactatatcataacctcagtctgcatcatattgaaacc |
400 |
Q |
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| T |
6316629 |
tttataaataggaaactaaagatcaatgcaaatagagaaaaataaccatattcactgccgaaaactatatcataacctcagtctgcatcatattgaaacc |
6316728 |
T |
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| Q |
401 |
atattaaccccagacacgtatcgg--ttgtattgtgtct |
437 |
Q |
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| T |
6316729 |
atattaaccccagacacgtatcggtattgtattgtgtct |
6316767 |
T |
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