View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13242_high_8 (Length: 312)

Name: NF13242_high_8
Description: NF13242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13242_high_8
NF13242_high_8
[»] chr7 (1 HSPs)
chr7 (8-302)||(42275601-42275894)


Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 302
Target Start/End: Original strand, 42275601 - 42275894
Alignment:
Q  8 tgcaagaggattgggaacataactagagactttgtgcattttgccatcaagttgttttggcttagacttgtacaaattggtgcaatttttgagctaagag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42275601 tgcaagaggattgggaacataactagagactttgtgcattttgccatcaagttgttttggcttagacttgtacaa-ttggtgcaatttttgagctaagag 42275699  T
Q  108 taggtttctttaaatgaagttgcggtaggaagagaagagaatatggaaagcatcaaaatatgatactacattacgtgcaggttgttccaatggctttgaa 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42275700 taggtttctttaaatggagttgcggtaggaagagaagagaatatggaaagcatcaaaatatgatactacattacgtgcaggttgttgcaatggctttgaa 42275799  T
Q  208 gtttgaagaagatctgtgacaatctattgtcttaaagcaaggaccacacgctttattgtacttgctttctattgcctttgccaatttggacaata 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42275800 gtttgaagaagatctgtgacaatctattgtcttaaagcaaggaccacacgctttattgtacttgctttctattgcctttgccaatttggacaata 42275894  T

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