View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13242_low_1 (Length: 858)
Name: NF13242_low_1
Description: NF13242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13242_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 749; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 749; E-Value: 0
Query Start/End: Original strand, 11 - 841
Target Start/End: Original strand, 31944658 - 31945487
Alignment:
| Q |
11 |
cacagaaacaaacaaactactagacgatcaaaatcaataactgcatggaatctaaatccgcacgcctaactgagctgccaccaaattgtcatgaaaactg |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31944658 |
cacagaaacaaacaaactactagacgatcaaaatcaataactgcatggaatttaaatccgcacgcctaactgagctgccaccaaattgtcatgaaaactg |
31944757 |
T |
|
| Q |
111 |
ctgccacaactagagacatccccttggttgacttatcagcatggccatgggcttgtcctgcccaaatgtccactccaaacgggagttttccggtccctga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31944758 |
ctgccacaactagagacatccccttggttgacttatcagcatggccatgggcgtgtcctgcccaaatgtccactccaaacgggagttttccggtccctga |
31944857 |
T |
|
| Q |
211 |
cttgatcgaactgcatgcactcaaatacatttctagttannnnnnnattttctacttaaaacaaaaaatcagaagattgaactacaatacaatacccttt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31944858 |
cttgatcgaactgcatgcactcaaatacatttctagttatttttt-attttctacttaaaacaaaaaatcagaagattgaactacaatacaatacccttt |
31944956 |
T |
|
| Q |
311 |
ggaatgtgtagaacagaaagtaatgaggtaatctgcagaggaacaggtgaaggtgctagttccatcatcataagcatagctataagcgcgtggacacgcg |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31944957 |
ggaatgtgtagaacagaaagtaatgaggtaatctgcagaggaacaagtgaaggtgctagttccatcatcataagcatagctataagcgcgtggacacgcg |
31945056 |
T |
|
| Q |
411 |
ctcttgaagaactgcgagtatgaacttggcttacaagtctgcggagttccataagcgccattgcaacaatacaatggatcaccaaaggcttcacacgcgc |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31945057 |
ctcttgaagaactgcgagtatgaacttggcttacaagtctgcggagttccataagcgccattgcaacaatacaatggatcaccaaaggcttcgcacgcgc |
31945156 |
T |
|
| Q |
511 |
ttttacacgccacgctcttttcatcactcccttcaccttccgccgcaattttcacctttagttctgtcggacacgcgccgtttaagtccactaaacagcc |
610 |
Q |
| |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
31945157 |
ttttacatgccacgctcttttcatcactcccttcttcttccgccgcaattttcacctttagttctgtcggacacgcgccatttaagtctactaaacagcc |
31945256 |
T |
|
| Q |
611 |
cgtggtcgtgcagtttccaccgccgccacttggttccactgttatgggaaggttgtaaccgtcgactaggcttacatcgtagaaatctagtccattagca |
710 |
Q |
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||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
31945257 |
cgtagtcgtgcagtttccactgccgccacttggttccactgttatgggaaggttgtaaccgtcgactaggctgacgtcgtagaaatctagtccattagca |
31945356 |
T |
|
| Q |
711 |
ccgtttaatgtgaactccacgagcgtcgctggagggatggcgccgctgccagtgcattctactttagaggagccgcagtctccagtgatgcatgagaatt |
810 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31945357 |
ccgtttaatgtgaactccgcgagcgtcgctggagggatggcgccgctgccagtgcattctactttagaggagccgcagtctccagtgatgcatgagaatt |
31945456 |
T |
|
| Q |
811 |
ttccggaggggtcggttgagcatagtgttcg |
841 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
31945457 |
ttccggaggggtcggttgagcatagtgttcg |
31945487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 363 - 520
Target Start/End: Original strand, 14039296 - 14039453
Alignment:
| Q |
363 |
gtgctagttccatcatcataagcatagctataagcgcgtggacacgcgctcttgaagaactgcgagtatgaacttggcttacaagtctgcggagttccat |
462 |
Q |
| |
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||||| ||| ||||||||||||| |||||||||||||| ||||| || |||||||| ||||| ||||||||||||||||| || || | |||| | | |
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| T |
14039296 |
gtgcttgtttcatcatcataagcgtagctataagcgcgaggacaagcactcttgaaaaactgtgagtatgaacttggcttgcatgtatttggagaagcgt |
14039395 |
T |
|
| Q |
463 |
aagcgccattgcaacaatacaatggatcaccaaaggcttcacacgcgcttttacacgc |
520 |
Q |
| |
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|||||||| | |||||||| |||||| ||||| ||||||||||||||||||||||| |
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| T |
14039396 |
aagcgccactacaacaatattgtggatccccaaacgcttcacacgcgcttttacacgc |
14039453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 339 - 520
Target Start/End: Original strand, 18954243 - 18954424
Alignment:
| Q |
339 |
taatctgcagaggaacaggtgaaggtgctagttccatcatcataagcatagctataagcgcgtggacacgcgctcttgaagaactgcgagtatgaacttg |
438 |
Q |
| |
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||||||||||| | ||| | ||| ||||| |||||||||||||||||||| |||||||| |||||||| || ||||| ||||| || ||||| ||||||| |
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| T |
18954243 |
taatctgcagaagcacaagcgaaagtgcttgttccatcatcataagcataactataagcacgtggacatgcactcttaaagaattgtgagtacgaacttg |
18954342 |
T |
|
| Q |
439 |
gcttacaagtctgcggagttccataagcgccattgcaacaatacaatggatcaccaaaggcttcacacgcgcttttacacgc |
520 |
Q |
| |
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|||| || || | ||||| | ||||||||||| |||||||| |||| ||||| ||||||||||||||||||||||| |
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| T |
18954343 |
gcttgcatgtatctggagtagcgtaagcgccattacaacaatattgcagatctccaaacgcttcacacgcgcttttacacgc |
18954424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 339 - 533
Target Start/End: Complemental strand, 8798358 - 8798164
Alignment:
| Q |
339 |
taatctgcagaggaacaggtgaaggtgctagttccatcatcataagcatagctataagcgcgtggacacgcgctcttgaagaactgcgagtatgaacttg |
438 |
Q |
| |
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||||| ||||| | ||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||| || ||||||||||| ||||||| |
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| T |
8798358 |
taatcagcagaagcacaagtgaaagtgctagttccatcatcataagcgtaactataagcgcgtggacacgcactcttaaaaaactgcgagtaggaacttg |
8798259 |
T |
|
| Q |
439 |
gcttacaagtctgcggagttccataagcgccattgcaacaatacaatggatcaccaaaggcttcacacgcgcttttacacgccacgctcttttca |
533 |
Q |
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| ||||| || | ||| | |||||||||||| |||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
8798258 |
gtttacacgtatccggggaaccataagcgccactgcagcaatattgcggatccccaaacgcttcacacgcgcttttacacgccacgctctcttca |
8798164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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