View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13242_low_15 (Length: 258)
Name: NF13242_low_15
Description: NF13242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13242_low_15 |
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| [»] chr8 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 20135964 - 20135706
Alignment:
| Q |
1 |
atcagaaacatcagctgctgtagtattttttagctctacatgaacatcagctgctgcagaattttttggcgcttcaggttccaaaaatttactaacagaa |
100 |
Q |
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||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20135964 |
atcagaaacatcagctgatgtagtattttttagcactacatgaacatcagctgctgcagaattttttggcgcttcaggttccaaaaatttactaacagaa |
20135865 |
T |
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| Q |
101 |
atatcagttgctgctgnnnnnnnnatggctaccggttccaaaacagtttttt-gaaacagctgattgcgttgatgagacacactgtccccgtgtccttcc |
199 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
20135864 |
atatcagttgctgctgttttttttatggctaccggttccaaaacagtttttttgaaacagctgattgcattgatgagacacactgtccccgtgtccttcc |
20135765 |
T |
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| Q |
200 |
agatcagtagtatgtttcgttgatgatgcctctggtttgctgacaccttccttcgtgct |
258 |
Q |
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|||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||| |
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| T |
20135764 |
agatcagtagtatgtttcgttggtaatgcctttggtttgctgacaccttccttcgtgct |
20135706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 20136112 - 20136001
Alignment:
| Q |
3 |
cagaaacatcagctgctgtagtattttttagctctacatgaacatcagctgctgcagaattttttggcgcttcaggttccaaaaatttactaacagaaat |
102 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||| ||||||||| ||| ||||||| ||| | ||||||||||||||||||||||||||| |
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| T |
20136112 |
cagaaacatcagctgctgcagtattttttagtgctacatgaacctcagctgctccagtattttttagcgttacaggttccaaaaatttactaacagaaac |
20136013 |
T |
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| Q |
103 |
atcagttgctgc |
114 |
Q |
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||||| |||||| |
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| T |
20136012 |
atcagctgctgc |
20136001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 44356107 - 44356365
Alignment:
| Q |
1 |
atcagaaacatcagctgctgtagtattttttagctctacatgaacatcagctgctgcagaattttttggcgcttcaggttccaaaaatttactaacagaa |
100 |
Q |
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||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44356107 |
atcagaaacatcagctgatgtagtattttttagcactacatgaacatcagctgctgcagaattttttggcgcttcaggttccaaaaatttactaacagaa |
44356206 |
T |
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| Q |
101 |
atatcagttgctgctgnnnnnnnnatggctaccggttccaaaacagtttt-ttgaaacagctgattgcgttgatgagacacactgtccccgtgtccttcc |
199 |
Q |
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| T |
44356207 |
atatcagttgctgctgttttttttatggctaccggttccaaaacagtttttttgaaacagctgattgcattgatgagacacactgtccccgtgtccttcc |
44356306 |
T |
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| Q |
200 |
agatcagtagtatgtttcgttgatgatgcctctggtttgctgacaccttccttcgtgct |
258 |
Q |
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|||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||| |
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| T |
44356307 |
agatcagtagtatgtttcgttggtaatgcctttggtttgctgacaccttccttcgtgct |
44356365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 44355959 - 44356070
Alignment:
| Q |
3 |
cagaaacatcagctgctgtagtattttttagctctacatgaacatcagctgctgcagaattttttggcgcttcaggttccaaaaatttactaacagaaat |
102 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||| ||||||||| ||| ||||||| ||| | ||||||||||||||||||||||||||| |
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| T |
44355959 |
cagaaacatcagctgctgcagtattttttagtgctacatgaacctcagctgctccagtattttttagcgttacaggttccaaaaatttactaacagaaac |
44356058 |
T |
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| Q |
103 |
atcagttgctgc |
114 |
Q |
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| T |
44356059 |
atcagctgctgc |
44356070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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