View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13242_low_16 (Length: 236)
Name: NF13242_low_16
Description: NF13242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13242_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 20136236 - 20136463
Alignment:
| Q |
1 |
ttgattggatatctctgttggctcaaatggggagatgttgataggagttgagtttgtggaaggtggtggggatgaggaaggatagtggtaccaatgaagg |
100 |
Q |
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| T |
20136236 |
ttgattggttatctcaattgcctcaattggggagatgttgataggagttgagtttgtggaaggtggtggggatgaggaaggatagtggtaccaatgaagg |
20136335 |
T |
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| Q |
101 |
tgttagacatataatgtgagggggttaggaggaggagaaaagagggtggaggtccgacgtttagttagag-nnnnnnntccttttgtgctttgtattcag |
199 |
Q |
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| T |
20136336 |
tgtt-gacatataatgtgagggggttaggaggaggagaaaagagggtggaggtccgacgtttagttagagaaaaaaaatccttttgtactttgtattcag |
20136434 |
T |
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| Q |
200 |
gaatccaagttatctgtggttgatgatgt |
228 |
Q |
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| T |
20136435 |
gaatctaagttatttgtggttgatgatgt |
20136463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 44355835 - 44355608
Alignment:
| Q |
1 |
ttgattggatatctctgttggctcaaatggggagatgttgataggagttgagtttgtggaaggtggtggggatgaggaaggatagtggtaccaatgaagg |
100 |
Q |
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| T |
44355835 |
ttgattggttatctcaattgcctcaattggggagatgttgataggagttgagtttgtggaaggtggtggggatgaggaaggatagtggtaccaatgaagg |
44355736 |
T |
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| Q |
101 |
tgttagacatataatgtgagggggttaggaggaggagaaaagagggtggaggtccgacgtttagttagag-nnnnnnntccttttgtgctttgtattcag |
199 |
Q |
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| T |
44355735 |
tgtt-gacatataatgtgagggggttaggaggaggagaaaagagggtggaggtccgacgtttagttagagaaaaaaaatccttttgtactttgtattcag |
44355637 |
T |
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| Q |
200 |
gaatccaagttatctgtggttgatgatgt |
228 |
Q |
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| T |
44355636 |
gaatctaagttatttgtggttgatgatgt |
44355608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 48782775 - 48782719
Alignment:
| Q |
110 |
tataatgtgagggggttaggaggaggagaaaagagggtggaggtccgacgtttagtt |
166 |
Q |
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|||||||| |||||||||||||||| || ||||||||||| || || ||||||||| |
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| T |
48782775 |
tataatgtccgggggttaggaggaggggagaagagggtggaagtgcgtcgtttagtt |
48782719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 28287595 - 28287642
Alignment:
| Q |
110 |
tataatgtgagggggttaggaggaggagaaaagagggtggaggtccga |
157 |
Q |
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| T |
28287595 |
tataatgtgagggggttgggaggtggtgaaaagagggtggaggtccga |
28287642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 18644298 - 18644344
Alignment:
| Q |
110 |
tataatgtgagggggttaggaggaggagaaaagagggtggaggtccg |
156 |
Q |
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|||||||| |||||||||||||| ||||| ||||||||||||||||| |
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| T |
18644298 |
tataatgtaagggggttaggaggtggagagaagagggtggaggtccg |
18644344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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