View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13242_low_17 (Length: 209)
Name: NF13242_low_17
Description: NF13242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13242_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 7e-76; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 28772442 - 28772269
Alignment:
| Q |
16 |
atgaaagaaaacaacttttacaaacagcagaatacaatacctcaagaaatgaaagaaaaacaaattttataatgctgaaatgatccaaacatggtaagaa |
115 |
Q |
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| T |
28772442 |
atgaaagaaaacaacttttacaa-cagcagaatacaatgcatcaagaaatgaaagaaaa-caaattttataatgctgaaatgatccaaacatggtaagaa |
28772345 |
T |
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| Q |
116 |
cacaaaagtgcttgtgagtaacgttttttctgacgccatgtggcaggcattttggagtgaagaagtgcacgcaaac |
191 |
Q |
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| T |
28772344 |
cacaaaagtgctcgtgagtaacgtttgttctgacgccatgtggcaggcattttggagtgaagaagtgcacgcaaac |
28772269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 28786430 - 28786263
Alignment:
| Q |
16 |
atgaaagaaaacaacttttacaaacagcagaatacaatacctcaagaaatgaaagaaaaacaaattttataatgctgaaatgatccaaacatggtaagaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
28786430 |
atgaaagaaaacaacttttacaaacagcagaatacaatgcatcaagaaatgaaagaaaa-caaattttataatgct------atccaaacatggtaagaa |
28786338 |
T |
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| Q |
116 |
cacaaaagtgcttgtgagtaacgttttttctgacgccatgtggcaggcattttggagtgaagaagtgcacgcaaac |
191 |
Q |
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| T |
28786337 |
cacaaaagtgcaggtgagtaacatttgtt-tgatgccatgtggcaggcattttggagtgaagaagtgcacgcaaac |
28786263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 28772489 - 28772432
Alignment:
| Q |
16 |
atgaaagaaaacaacttttacaaacagcagaatacaatacctcaagaaatgaaagaaaa |
74 |
Q |
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||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||| |
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| T |
28772489 |
atgaaagaaaacaacttttacaa-cagcagaatacaatgcatcaagaaatgaaagaaaa |
28772432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 28772517 - 28772479
Alignment:
| Q |
36 |
caaacagcagaatacaatacctcaagaaatgaaagaaaa |
74 |
Q |
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| T |
28772517 |
caaacagcagaatacaaagcctcaagaaatgaaagaaaa |
28772479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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