View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13242_low_2 (Length: 467)
Name: NF13242_low_2
Description: NF13242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13242_low_2 |
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| [»] scaffold0110 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 6 - 453
Target Start/End: Original strand, 44015897 - 44016344
Alignment:
| Q |
6 |
agattatactgagtgcaagatataggaaattgctgttttgatgtccattgtttcttaaaaacacatgaaaatgacaacaacnnnnnnnccatcagtattt |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44015897 |
agattatactgagtgcaagatataggaaattgctgttttgatgtccattgtttcttaaaaacacatgaaaatgacaacaacaaaaaaaccatcagtattt |
44015996 |
T |
|
| Q |
106 |
aactaccgccaattttctgctttgaagtcagcggtagttacctactactgagttattttttgtcaattagcctaatttgattctcgaactgttgcttttt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44015997 |
aactaccgccaattttctgctttgaagtcagcggtagttacctactactgagttattttttgtcaattagcctaatttgattctcgaactgttgcttttt |
44016096 |
T |
|
| Q |
206 |
catgtgtgttgtgtgtagctgaaagtcaaattacaaattttgttaatgccaccttgaagctccgtcaatgattggtcctgaacttgaaggcattgtacca |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44016097 |
catgtgtgttgtgtgtagctgaaagtcaaattacaaattttgttaatgccaccttgaagctccatcaatgattggtcctgaacttgaaggcattgtacca |
44016196 |
T |
|
| Q |
306 |
ccaccgtctgattgtgaatctaagaagctataaggtatgatctcattcatgaatggtgatgtgggaaatggtggcccctcgatgcaacctatttgtccat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44016197 |
ccaccgtctgattgtgaatctaagaagctataaggtatgatctcattcatgaatggtgatgtgggaaatggtggcccctcgatgcaacctatttgtccat |
44016296 |
T |
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| Q |
406 |
tattattgtttgatacatagttgccagtctcgagagtatcaccaaaat |
453 |
Q |
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| T |
44016297 |
tattattgtttgatacatagttgccagtctcgagagtatcaccaaaat |
44016344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 304 - 453
Target Start/End: Complemental strand, 44030418 - 44030269
Alignment:
| Q |
304 |
caccaccgtctgattgtgaatctaagaagctataaggtatgatctcattcatgaatggtgatgtgggaaatggtggcccctcgatgcaacctatttgtcc |
403 |
Q |
| |
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||||||||||||||||||||||| |||||| ||||| ||| ||||||||||||||||||||||||||| || || ||| |||||||||||||| | |
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| T |
44030418 |
caccaccgtctgattgtgaatctgggaagctgtaaggcatgc---cattcatgaatggtgatgtgggaaatgatgaccaatcggtgcaacctatttgtgc |
44030322 |
T |
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| Q |
404 |
attattattgtttgatacatagttgccagtctcgagag---tatcaccaaaat |
453 |
Q |
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| T |
44030321 |
attattattgtttgctacatagttgccattctctagagatttatcaccaaaat |
44030269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 11601 - 11556
Alignment:
| Q |
35 |
ttgctgttttgatgtccattgtttcttaaaaacacatgaaaatgac |
80 |
Q |
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||||| |||||||||||||||||||||||||| | ||||||||||| |
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| T |
11601 |
ttgcttttttgatgtccattgtttcttaaaaatatatgaaaatgac |
11556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 19338 - 19293
Alignment:
| Q |
35 |
ttgctgttttgatgtccattgtttcttaaaaacacatgaaaatgac |
80 |
Q |
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||||| |||||||||||||||||||||||||| | ||||||||||| |
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| T |
19338 |
ttgcttttttgatgtccattgtttcttaaaaatatatgaaaatgac |
19293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 41324884 - 41325001
Alignment:
| Q |
28 |
taggaaattgctgttttgatgtccattgtttcttaaaaacacatgaaaatgacaacaacnnnnnnnccatcagtatttaactaccgccaattttctgctt |
127 |
Q |
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||||||| ||||||||||| |||||||||||||| |||||||| |||| || | || ||| ||||| |||||||||||| ||||||||||| |
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| T |
41324884 |
taggaaactgctgttttgacatccattgtttcttagaaacacattgaaattaccaaaa-----agtccagcagtagttaactaccgccgattttctgctt |
41324978 |
T |
|
| Q |
128 |
tgaagtcagcggtagttacctac |
150 |
Q |
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||||||||| | |||||| |||| |
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| T |
41324979 |
tgaagtcagtgatagttaactac |
41325001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 82
Target Start/End: Complemental strand, 47059347 - 47059316
Alignment:
| Q |
51 |
cattgtttcttaaaaacacatgaaaatgacaa |
82 |
Q |
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| T |
47059347 |
cattgtttcttaaaaacacatgaaaatgacaa |
47059316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 32109720 - 32109754
Alignment:
| Q |
116 |
aattttctgctttgaagtcagcggtagttacctac |
150 |
Q |
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|||||||||||||||||||||||||||||| |||| |
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| T |
32109720 |
aattttctgctttgaagtcagcggtagttaactac |
32109754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 26851275 - 26851235
Alignment:
| Q |
104 |
ttaactaccgccaattttctgctttgaagtcagcggtagtt |
144 |
Q |
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|||||||||||| |||||||||| |||| |||||||||||| |
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| T |
26851275 |
ttaactaccgccgattttctgctctgaaatcagcggtagtt |
26851235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 26851376 - 26851336
Alignment:
| Q |
39 |
tgttttgatgtccattgtttcttaaaaacacatgaaaatga |
79 |
Q |
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| T |
26851376 |
tgttttgacatctattgtttcttaaaaacacatgaaaatga |
26851336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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