View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13242_low_5 (Length: 388)
Name: NF13242_low_5
Description: NF13242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13242_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 370
Target Start/End: Complemental strand, 32702692 - 32702339
Alignment:
| Q |
17 |
cagagatttaaattcatccaatccaaaattgaagagcaggtaagttgatatgatgaaatgaagcctacactaaggcatattaattggtttaacatttcca |
116 |
Q |
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| T |
32702692 |
cagagatttaaattcatccaatccaaaattgaagagcaggtaagtttatatgatgaaatgaagcctacactaaggcatattaattggtttaacatttcca |
32702593 |
T |
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| Q |
117 |
actattctcatgtgtctttaggggttggtggacaccaattttatttacagccggtttgacatctgcaaagttcttcatggaccatgtttcaaggaaaaat |
216 |
Q |
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| T |
32702592 |
actattctcatgtgtctttaggggttggtggacaccaattttatttacggccggtttgacatctgcaaagttcttcatggaccatgtttcaaggaaaaat |
32702493 |
T |
|
| Q |
217 |
actctcacacaggctagaaggaacatttctagacattatgatctggtataaattaagacattatggaccatgtttctgatttttccttctgtgatttttt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32702492 |
actctcacacaggctagaaggaacatttctagacattatgatctggtataaattaagacattatggaccatgtttctgatttttccttctgtgatttttt |
32702393 |
T |
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| Q |
317 |
atagttctgacactaaatcaagatattcttctttggtctttgtagagtaatgaa |
370 |
Q |
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| T |
32702392 |
atagttctgacactaaatcaagatattcttctttggtctttgtagagtaatgaa |
32702339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 132 - 267
Target Start/End: Original strand, 16810826 - 16810961
Alignment:
| Q |
132 |
ctttaggggttggtggacaccaattttatttacagccggtttgacatctgcaaagttcttcatggaccatgtttcaaggaaaaatactctcacacaggct |
231 |
Q |
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||||||||| |||||||| ||| |||| |||||||| ||||| ||||||||||||||||||| | ||||||||||| ||||||||| ||||||| ||| |
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| T |
16810826 |
ctttaggggatggtggactccagttttctttacagctggtttagcatctgcaaagttcttcatcaagcatgtttcaagaaaaaatactgtcacacaagct |
16810925 |
T |
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| Q |
232 |
agaaggaacatttctagacattatgatctggtataa |
267 |
Q |
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| T |
16810926 |
cgcagaaacatttctatgcattatgatctggtataa |
16810961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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