View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13242_low_7 (Length: 360)

Name: NF13242_low_7
Description: NF13242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13242_low_7
NF13242_low_7
[»] chr6 (8 HSPs)
chr6 (19-350)||(6920902-6921231)
chr6 (26-269)||(6954147-6954393)
chr6 (26-270)||(6942589-6942841)
chr6 (22-188)||(6934945-6935111)
chr6 (22-236)||(6947493-6947710)
chr6 (33-187)||(20770823-20770982)
chr6 (26-171)||(17369851-17369996)
chr6 (232-272)||(17370022-17370062)
[»] chr7 (12 HSPs)
chr7 (25-236)||(1985617-1985830)
chr7 (42-166)||(15571632-15571756)
chr7 (28-187)||(14076842-14077001)
chr7 (28-187)||(14386870-14387029)
chr7 (26-154)||(13416657-13416785)
chr7 (105-249)||(18514468-18514618)
chr7 (114-186)||(22064356-22064428)
chr7 (114-181)||(19350803-19350870)
chr7 (104-178)||(19597401-19597475)
chr7 (114-152)||(22524940-22524978)
chr7 (283-327)||(15571409-15571453)
chr7 (114-186)||(18982666-18982738)
[»] scaffold0354 (1 HSPs)
scaffold0354 (33-262)||(7663-7887)
[»] chr5 (1 HSPs)
chr5 (26-175)||(18964561-18964710)
[»] chr4 (5 HSPs)
chr4 (114-187)||(53775101-53775174)
chr4 (114-152)||(2911335-2911373)
chr4 (114-184)||(11970722-11970792)
chr4 (210-271)||(53775166-53775226)
chr4 (117-185)||(11981422-11981490)
[»] chr2 (4 HSPs)
chr2 (33-179)||(14515067-14515217)
chr2 (114-174)||(18908517-18908577)
chr2 (114-174)||(18913265-18913325)
chr2 (114-181)||(20712266-20712331)
[»] scaffold0097 (1 HSPs)
scaffold0097 (114-181)||(16105-16170)
[»] chr8 (1 HSPs)
chr8 (114-178)||(27618727-27618791)


Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 6921231 - 6920902
Alignment:
Q  19 atataccagaccaggcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  6921231 atataccagaccaggcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaattttgtggttcactgccaagggatatgt 6921132  T
Q  119 tgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttagcttgtgtatggtacaatgtattttgtgata 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6921131 tgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttagcttgtgtatggtacaatgtattttgtgata 6921032  T
Q  219 atttcatatcatggttttgatttgattatattgttgaatgattatctgttttattaactgtgaattttctcaattttatttactgttctaattttgagtt 318  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6921031 att--atatcatggttttgatttgattatattgttgaatgattatctgttttattaactgtgaattttctcgattttatttactgttctaattttgagtt 6920934  T
Q  319 tttatgtgtccattgatagaatgcaccctttg 350  Q
    ||||||||||||||||||||||||||||||||    
T  6920933 tttatgtgtccattgatagaatgcaccctttg 6920902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 26 - 269
Target Start/End: Complemental strand, 6954393 - 6954147
Alignment:
Q  26 agaccaggcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagc 125  Q
    |||||| ||||||||||||||||  ||| |||||||||||| || |||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6954393 agaccaagcaattctctataatttaaaaaataatagagcaacgagaattaaaagtaccaataaaatttggtggtccgctgccaagggatatgttgaaagc 6954294  T
Q  126 ttggtatcgacttcttgaaagtaagtttttgtt-cgatgatttacttgtttgaatttgtgttagcttgtgtatggtacaatgtattttgtga-taatttc 223  Q
    ||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||    
T  6954293 ttggtatcgacttcttgaaagtatgttttttttccgatgatttacttgtttgaatttgtgttagcttgtctatggtacaatgtattttgtgattattttc 6954194  T
Q  224 atatcatggttttgatttgattatattg-ttgaatgattatctgttt 269  Q
    ||| |||||||||||||||||||||||| ||||||||||||||||||    
T  6954193 ataccatggttttgatttgattatattgtttgaatgattatctgttt 6954147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 26 - 270
Target Start/End: Complemental strand, 6942841 - 6942589
Alignment:
Q  26 agaccaggcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagc 125  Q
    |||||| |||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6942841 agaccaagcaattctctataatttgaaagataatagagcaaagagaattaaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagc 6942742  T
Q  126 ttggtatcgacttcttgaaagtaagtttttgttcgatgatttactt-------gtttgaatttgtgttagcttgtgtatggtacaatgtattttgtgata 218  Q
    |||||||| |||||||||||||||||||||||| ||| |||| | |        ||||||||||||||||||||||||||||| |||||||||||||||     
T  6942741 ttggtatcaacttcttgaaagtaagtttttgtttgattatttccatatcatggttttgaatttgtgttagcttgtgtatggtagaatgtattttgtgatt 6942642  T
Q  219 attt-catatcatggttttgatttgattatattgttgaatgattatctgtttt 270  Q
    |||| ||||||||||||||||||| | ||||||||||||||||||||||||||    
T  6942641 atttccatatcatggttttgattttaatatattgttgaatgattatctgtttt 6942589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 6935111 - 6934945
Alignment:
Q  22 taccagaccaggcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttga 121  Q
    |||||||||| ||| ||||||||||||||| |||||||| |||||||| |||| |||||| |  ||||| || ||||| || ||||||||||||||||||    
T  6935111 taccagaccaagcatttctctataattggagagataatacagcaaagagaattaaaagtaacggtaaaaatttgtggttcagtgccaagggatatgttga 6935012  T
Q  122 aagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttag 188  Q
    ||| ||||||||||||||||||| |||| ||| | ||| ||||||||||||||||||||||||||||    
T  6935011 aagtttggtatcgacttcttgaaggtaattttctcttcaatgatttacttgtttgaatttgtgttag 6934945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 22 - 236
Target Start/End: Complemental strand, 6947710 - 6947493
Alignment:
Q  22 taccagaccaggcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttga 121  Q
    |||||||||| ||| ||||||||||||||| ||||||||||| ||||| |||| |||||||||| ||||||| ||||| || |||||| |||||||||||    
T  6947710 taccagaccaagcatttctctataattggagagataatagagtaaagagaattaaaagtaccaacaaaattttgtggttcagtgccaatggatatgttga 6947611  T
Q  122 aagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttagcttgtgtatg--gtacaatgtattttgtga-ta 218  Q
    |||||||| |||||  | ||||| |||||||| | || ||||||||||||||||| ||||| ||||| || ||||||  ||||||| |||| ||||| ||    
T  6947610 aagcttggcatcgatattttgaaggtaagtttctcttggatgatttacttgtttgtatttgagttagtttatgtatgatgtacaatatattgtgtgatta 6947511  T
Q  219 atttcatatcatggtttt 236  Q
     ||||| |||||||||||    
T  6947510 ttttcaaatcatggtttt 6947493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 33 - 187
Target Start/End: Original strand, 20770823 - 20770982
Alignment:
Q  33 gcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaa-----gctt 127  Q
    ||||| |||||||||| |||||||||||||  ||||| ||||||||||||| || ||||||||||||  | ||| ||||  ||||||||||     | ||    
T  20770823 gcaatcctctataatttgaaagataatagactaaagagaattgaaagtacctatgaaatttggtggtatagtgctaaggattatgttgaaagtttggttt 20770922  T
Q  128 ggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgtta 187  Q
    ||||||||| | |||||||||||||  | |||||||||||||||||||||||||||||||    
T  20770923 ggtatcgacctgttgaaagtaagttcctcttcgatgatttacttgtttgaatttgtgtta 20770982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 26 - 171
Target Start/End: Original strand, 17369851 - 17369996
Alignment:
Q  26 agaccaggcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagc 125  Q
    |||||| | ||||||||||||||||| | ||||||||| ||||| |||||||| |||| ||| ||||   |||    || ||||||| ||||||||||||    
T  17369851 agaccaagaaattctctataattggagaaataatagagtaaagaaaattgaaaatacctatagaattatttggaaggcttccaagggctatgttgaaagc 17369950  T
Q  126 ttggtatcgacttcttgaaagtaagtttttgttcgatgatttactt 171  Q
    |||||||| |||| |||||||||||||  | |||||||||||||||    
T  17369951 ttggtatctacttgttgaaagtaagttactcttcgatgatttactt 17369996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 17370022 - 17370062
Alignment:
Q  232 gttttgatttgattatattgttgaatgattatctgttttat 272  Q
    ||||||||||||||  |||||||||||||||||| ||||||    
T  17370022 gttttgatttgattgcattgttgaatgattatctattttat 17370062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 25 - 236
Target Start/End: Complemental strand, 1985830 - 1985617
Alignment:
Q  25 cagaccaggcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaag 124  Q
    ||||||| ||| ||||||||||| ||| ||||||||||| | | | |||| |||||||||||| ||||| ||||| || |||||||||||| ||||||||    
T  1985830 cagaccaagcatttctctataataggagagataatagagtagaaagaattaaaagtaccaatagaattttgtggttcagtgccaagggatacgttgaaag 1985731  T
Q  125 cttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttagcttgtgtatg-gtacaatgtattttgtga-taattt 222  Q
    ||||||||||| |||||||| |||||||| | |||||||||||||||||||||||||||||||| |||||||||  |||||| |||| ||||| || |||    
T  1985730 cttggtatcgatttcttgaaggtaagtttctcttcgatgatttacttgtttgaatttgtgttagtttgtgtatgtatacaatatattgtgtgattatttt 1985631  T
Q  223 catatcatggtttt 236  Q
    || |||||||||||    
T  1985630 caaatcatggtttt 1985617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 42 - 166
Target Start/End: Complemental strand, 15571756 - 15571632
Alignment:
Q  42 tataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcgacttctt 141  Q
    |||||||||| | ||||||||| ||||| |||| |||||| ||| |||||  | ||||||| ||||| |||||||||||||||||||||||||||||| |    
T  15571756 tataattggagatataatagagtaaagagaattaaaagtaacaaaaaaatccgttggtccaatgccaggggatatgttgaaagcttggtatcgacttcct 15571657  T
Q  142 gaaagtaagtttttgttcgatgatt 166  Q
    |||||||||||||||||||||||||    
T  15571656 gaaagtaagtttttgttcgatgatt 15571632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 28 - 187
Target Start/End: Original strand, 14076842 - 14077001
Alignment:
Q  28 accaggcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagctt 127  Q
    |||| |||||| |||||||||||| ||||||||||| ||||| |||| ||| |||||||| ||||| |||||    | |||||   ||||||||||||||    
T  14076842 accaagcaattatctataattggagagataatagagtaaagagaattaaaaataccaatagaattttgtggttgcattccaagaattatgttgaaagctt 14076941  T
Q  128 ggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgtta 187  Q
    ||||||||||| | |||||||||||  | ||||||||||||| ||||||||| |||||||    
T  14076942 ggtatcgacttttagaaagtaagttcctcttcgatgatttacatgtttgaatctgtgtta 14077001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 28 - 187
Target Start/End: Original strand, 14386870 - 14387029
Alignment:
Q  28 accaggcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagctt 127  Q
    |||| |||||| |||||||||||| ||||||||||| ||||| |||| ||| |||||||| ||||| |||||    | |||||   ||||||||||||||    
T  14386870 accaagcaattatctataattggagagataatagagtaaagagaattaaaaataccaatagaattttgtggttgcattccaagaattatgttgaaagctt 14386969  T
Q  128 ggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgtta 187  Q
    ||||||||||| | |||||||||||  | ||||||||||||| ||||||||| |||||||    
T  14386970 ggtatcgacttttagaaagtaagttcctcttcgatgatttacatgtttgaatctgtgtta 14387029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 154
Target Start/End: Complemental strand, 13416785 - 13416657
Alignment:
Q  26 agaccaggcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagc 125  Q
    |||||| | ||||| ||| ||| ||| ||||||||||| ||||| |||| ||||| ||||| |||||||||||| |   |||||||||||||||||||||    
T  13416785 agaccaagtaattcactacaataggagagataatagagtaaagagaattaaaagtcccaatcaaatttggtggttcgacgccaagggatatgttgaaagc 13416686  T
Q  126 ttggtatcgacttcttgaaagtaagtttt 154  Q
    ||||||||||||||  ||||||| |||||    
T  13416685 ttggtatcgacttcaagaaagtatgtttt 13416657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 249
Target Start/End: Complemental strand, 18514618 - 18514468
Alignment:
Q  105 gccaagggatatgttgaaagcttggtatc----gacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttagcttgtgtatg-g 199  Q
    ||||||| ||||||||| |||||| ||||    ||||| | ||||||||||   |||||  ||||||||||||||||||||| ||||  | ||||  | |    
T  18514618 gccaaggcatatgttgagagcttgatatctacagacttgtggaaagtaagtccctgttccgtgatttacttgtttgaatttgagttaaatcgtgtccgtg 18514519  T
Q  200 tacaatgtattttgtgataattt-catatcatggttttgatttgattatat 249  Q
    ||||||||||  ||| || |||| |||||||||||||||||||||||||||    
T  18514518 tacaatgtatcgtgtcattattttcatatcatggttttgatttgattatat 18514468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 186
Target Start/End: Original strand, 22064356 - 22064428
Alignment:
Q  114 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgtt 186  Q
    |||| |||||| ||||| |||  || |||||||||||||| | | ||| ||||||||||||||||||||||||    
T  22064356 tatgatgaaaggttggtttcgtattgttgaaagtaagtttctttacgacgatttacttgtttgaatttgtgtt 22064428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 19350870 - 19350803
Alignment:
Q  114 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaattt 181  Q
    |||||||||||||| || || || |||||||||||||||| | ||  |||||||| ||||||||||||    
T  19350870 tatgttgaaagcttagtttcaacctcttgaaagtaagtttctctttaatgatttaattgtttgaattt 19350803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 178
Target Start/End: Complemental strand, 19597475 - 19597401
Alignment:
Q  104 tgccaagggatatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaa 178  Q
    |||||| | |||||||||||||||||| ||||||  || ||||||||||| | ||| |  |||||||||||||||    
T  19597475 tgccaatgaatatgttgaaagcttggtttcgactaattaaaagtaagtttcttttcaacaatttacttgtttgaa 19597401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 22524978 - 22524940
Alignment:
Q  114 tatgttgaaagcttggtatcgacttcttgaaagtaagtt 152  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  22524978 tatgttgaaagcttggtttcaacttcttgaaagtaagtt 22524940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 15571453 - 15571409
Alignment:
Q  283 ttttctcaattttatttactgttctaattttgagtttttatgtgt 327  Q
    |||| |||||||||||||||||| |||||||||| ||||| ||||    
T  15571453 ttttttcaattttatttactgttttaattttgagcttttaagtgt 15571409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 18982738 - 18982666
Alignment:
Q  114 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgtt 186  Q
    ||||||||||||||||| ||||||  |||||||||| ||| | ||| |  ||||||||| |||||||| ||||    
T  18982738 tatgttgaaagcttggtttcgactagttgaaagtaaatttcttttcaactatttacttgattgaatttttgtt 18982666  T

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Target: scaffold0354 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 33 - 262
Target Start/End: Original strand, 7663 - 7887
Alignment:
Q  33 gcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtat 132  Q
    |||||| ||||||||| || ||||||||||| ||| | |||| ||||||||||| |||||  ||||| || ||||||||||||||| ||||||||||||     
T  7663 gcaattgtctataatttgagagataatagagtaaatagaattaaaagtaccaatcaaattccgtggttcaatgccaagggatatgtagaaagcttggtac 7762  T
Q  133 cgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttagcttgtgtatggtacaatgtattttgtga-taatttcatatcatg 231  Q
    |||||||||||| ||| | ||||| ||||| |||||||||||||||||| |||||| ||||     ||||| ||| || ||||| || |||||||| |||    
T  7763 cgacttcttgaaggtatg-ttttgctcgatcatttacttgtttgaatttttgttagtttgt-----gtacattgtcttgtgtgattattttcatattatg 7856  T
Q  232 gttttgatttgattatattgttgaatgatta 262  Q
    |||||||||||||||||||||| || |||||    
T  7857 gttttgatttgattatattgttcaacgatta 7887  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 175
Target Start/End: Complemental strand, 18964710 - 18964561
Alignment:
Q  26 agaccaggcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagc 125  Q
    |||||| ||||||||||||||||||| ||||||||||| ||||| |||||||| |||   |||||  |  |||    || ||||||| ||||||||||||    
T  18964710 agaccaagcaattctctataattggagagataatagagtaaagaaaattgaaaatacatgtaaaaaattttggaaggcttccaagggctatgttgaaagc 18964611  T
Q  126 ttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgttt 175  Q
    ||| |||| |||| |||||||||||||  | || ||||| ||||||||||    
T  18964610 ttgatatctacttgttgaaagtaagttcctctttgatgacttacttgttt 18964561  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 53775101 - 53775174
Alignment:
Q  114 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgtta 187  Q
    |||||||||||||||||||| || | |||||||||||||  | ||| | |||||||||||||||||||||||||    
T  53775101 tatgttgaaagcttggtatcaacgtgttgaaagtaagttcctcttccaagatttacttgtttgaatttgtgtta 53775174  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 152
Target Start/End: Original strand, 2911335 - 2911373
Alignment:
Q  114 tatgttgaaagcttggtatcgacttcttgaaagtaagtt 152  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  2911335 tatgtagaaagcttggtatcaacttcttgaaagtaagtt 2911373  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 11970792 - 11970722
Alignment:
Q  114 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtg 184  Q
    ||||||||||||||||| | |  || |||||||||||||| | | |||  |||||||||||||||||||||    
T  11970792 tatgttgaaagcttggttttgtattgttgaaagtaagtttctctacgacaatttacttgtttgaatttgtg 11970722  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 53775166 - 53775226
Alignment:
Q  210 tttgtgataatttcatatcatggttttgatttgattatattgttgaatgattatctgtttta 271  Q
    |||||| |||||| |||| || |||||||||||||| ||||||||||||||| ||| |||||    
T  53775166 tttgtgttaattt-atatgatagttttgatttgattgtattgttgaatgattctctctttta 53775226  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 11981490 - 11981422
Alignment:
Q  117 gttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgt 185  Q
    |||||||||||||| |||  || |||||||||||||| | | | |  ||||||||||||||||||||||    
T  11981490 gttgaaagcttggtttcgtattgttgaaagtaagtttctctacaacaatttacttgtttgaatttgtgt 11981422  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 33 - 179
Target Start/End: Original strand, 14515067 - 14515217
Alignment:
Q  33 gcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtat 132  Q
    |||||||| || ||||||||||||||||||| ||||| |||  |||| ||||||| ||||   |||  ||  ||||||| |||||||||||| ||| |||    
T  14515067 gcaattctttacaattggaaagataatagagtaaagagaatcaaaagcaccaatagaattacatggagcagggccaaggcatatgttgaaagtttgatat 14515166  T
Q  133 cgac----ttcttgaaagtaagtttttgttcgatgatttacttgtttgaat 179  Q
    ||||    || || ||||||||||  ||||| |||||||||||||||||||    
T  14515167 cgacagacttgttaaaagtaagttcctgttcaatgatttacttgtttgaat 14515217  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 18908577 - 18908517
Alignment:
Q  114 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtt 174  Q
    ||||||||||||||||| || || |||||||||||||||||| |||||||||||| |||||    
T  18908577 tatgttgaaagcttggtttcaacctcttgaaagtaagtttttcttcgatgatttaattgtt 18908517  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 18913325 - 18913265
Alignment:
Q  114 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtt 174  Q
    |||||||||||||||||||| || |||||||||||||||| | ||| |||||||| |||||    
T  18913325 tatgttgaaagcttggtatcaacctcttgaaagtaagtttctcttcaatgatttaattgtt 18913265  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 20712331 - 20712266
Alignment:
Q  114 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaattt 181  Q
    ||||| ||||||||||| || |||| |||||||||||||  | ||  |||||||||||||||||||||    
T  20712331 tatgtcgaaagcttggtttcaacttgttgaaagtaagttcctctt--atgatttacttgtttgaattt 20712266  T

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Target: scaffold0097 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 16170 - 16105
Alignment:
Q  114 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaattt 181  Q
    ||||| ||||||||||| || |||| |||||||||||||  | ||  |||||||||||||||||||||    
T  16170 tatgtcgaaagcttggtttcaacttgttgaaagtaagttcctctt--atgatttacttgtttgaattt 16105  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 27618727 - 27618791
Alignment:
Q  114 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaa 178  Q
    ||||||||||||||||| || | ||||||||||||||||  | || || || |||||||||||||    
T  27618727 tatgttgaaagcttggtttcaatttcttgaaagtaagttcctatttgacgaattacttgtttgaa 27618791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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