View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13243_high_14 (Length: 309)
Name: NF13243_high_14
Description: NF13243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13243_high_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 10621359 - 10621505
Alignment:
| Q |
18 |
ggcatatattactagatcccatagggatacaaatacaatattcactaccgcatgttgcccatggtgttgaacaaggacctatggaacaattgtgtgcttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10621359 |
ggcatatattactagatcccatagggatacaaatacaatattcactaccgcatgttgcccatggtgttgaacaaggacctatggaacaatggtgtgcttc |
10621458 |
T |
|
| Q |
118 |
taccttcttcaccgggaacattactgcaaataaaagaagcgaattaa |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10621459 |
taccttcttcaccgggaacattactgcaaataaaagaagcgaattaa |
10621505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 143
Target Start/End: Complemental strand, 20472018 - 20471985
Alignment:
| Q |
110 |
tgtgcttctaccttcttcaccgggaacattactg |
143 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
20472018 |
tgtgcttctaccttcttcatcgggaacattactg |
20471985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 183 - 299
Target Start/End: Complemental strand, 18053382 - 18053266
Alignment:
| Q |
183 |
atgtataattattgatcatattcctaatatgtaattctgtattattctgtattacaaattacaagnnnnnnnncgaaggaggatttgaaatgcgaaatct |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
18053382 |
atgtataattattgatcatattcctaatatgtaattctgtattattatgtattacaaattacaagaaaaaaaacgaaggaggatttgaaatgcgagatct |
18053283 |
T |
|
| Q |
283 |
aaaaacatatctctctg |
299 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
18053282 |
aaaaacatatctctctg |
18053266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 21690007 - 21689916
Alignment:
| Q |
208 |
aatatgtaattctgtattattctgtattacaaattacaagnnnnnnnncgaaggaggatttgaaatgcgaaatctaaaaacatatctctctg |
299 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21690007 |
aatatgtaattctgtattattatgtattacaaattacaagaaaaaaaacaaaggaggatttgaaatgcgagatctaaaaacatatctctctg |
21689916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 183 - 299
Target Start/End: Complemental strand, 17652097 - 17651981
Alignment:
| Q |
183 |
atgtataattattgatcatattcctaatatgtaattctgtattattctgtattacaaattacaagnnnnnnnncgaaggaggatttgaaatgcgaaatct |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||| |||| |
|
|
| T |
17652097 |
atgtataattattgatcatattcctaatatgtaattctgtattattatgtattacaaattacaagaaaaaaaacaaaggaggatttgaaatgcgagatct |
17651998 |
T |
|
| Q |
283 |
aaaaacatatctctctg |
299 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
17651997 |
aaaaacatatctctctg |
17651981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 8438094 - 8438158
Alignment:
| Q |
183 |
atgtataattattgatcatattcctaatatgtaattctgtattattctgtattacaaattacaag |
247 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
8438094 |
atgtataattattgatcatactcctaatatgtaattctgtattattatgtaatacaaattacaag |
8438158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University