View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13243_high_15 (Length: 279)
Name: NF13243_high_15
Description: NF13243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13243_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 26601004 - 26601251
Alignment:
| Q |
11 |
cagagaaagagccctcaataaattgtgttataagaatcagtcgatcgatttagagagataaatacaaaaaatagataattgattctacaattaagtggat |
110 |
Q |
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| T |
26601004 |
cagagaaagagccctcaataaattgtgttataagaatcagg---tcgatttagagagataaatacaaaaaatagataattgattctataattaagtagat |
26601100 |
T |
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| Q |
111 |
tccatcacaattaattatttttcatttttacaaacgttttgtgtcttttcctctttaaacggaagaaataaagatgattctaaattgagaggatcctcct |
210 |
Q |
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| T |
26601101 |
ttcatcataattaattatttttcatttttacaaactttttgtgtcttttcctctttaaacggaagaaataaagatgattttaaattgagaggatcctctt |
26601200 |
T |
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| Q |
211 |
aacttcaattattgacgttcgaatattttagttgatcaagatgatgacctt |
261 |
Q |
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| T |
26601201 |
aatttcaattattgacgttccactatcttagttgatcaagatgatgacctt |
26601251 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 14688647 - 14688591
Alignment:
| Q |
58 |
atttagagagataaatacaaaaaatagataattgattctacaattaagtggattcca |
114 |
Q |
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| T |
14688647 |
atttagagagatcgacacataaaatagatattggattctaccattaagtggattcca |
14688591 |
T |
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