View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13243_high_18 (Length: 254)
Name: NF13243_high_18
Description: NF13243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13243_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 26711731 - 26711966
Alignment:
| Q |
1 |
ctgaccttgtatagataactggccaaattgtttcatacccaccatttataattatcatactgactccaccaacatatgggttaggtccaacctttccttt |
100 |
Q |
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| T |
26711731 |
ctgaccttgtatagatagctggccaaattgtttcatacccaccatttataattagcatactgactccaccaacatatgggttaggtttagcctttccttt |
26711830 |
T |
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| Q |
101 |
tgaaagcaaaatgttgagaaatattataaaagacataaacattgaaccaatcattgaagacattgacaatgtttttctccttcagttatttcttctctaa |
200 |
Q |
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| T |
26711831 |
tgaaagcaaaatgttgagaaatattataaaagacataaacattgaaccaatcattgaagacattgacaatgtttttctccttcagttatttcttttctaa |
26711930 |
T |
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| Q |
201 |
tcttcatattaataataaatattgaggtctagatgg |
236 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
26711931 |
tcttcttattaataataaatattgaggtctagatgg |
26711966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 26715657 - 26715729
Alignment:
| Q |
9 |
gtatagataactggccaaattgtttcatacccaccatttataattatcatactgactccaccaacatatgggt |
81 |
Q |
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||||| ||| |||||||||||||| |||| ||||||||| |||||| |||||| |||||||| ||||||||| |
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| T |
26715657 |
gtatatatagctggccaaattgttccataaccaccatttgtaattaacatacttactccaccggcatatgggt |
26715729 |
T |
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