View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13243_high_2 (Length: 826)
Name: NF13243_high_2
Description: NF13243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13243_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 730; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 730; E-Value: 0
Query Start/End: Original strand, 14 - 808
Target Start/End: Original strand, 43051005 - 43051812
Alignment:
| Q |
14 |
aatatatatcttagcaaaaatagatttctttcaagtatgcaagagttagaaagaatggtgca-------catcattcttcattttaggtaacaagcaaaa |
106 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
43051005 |
aatatacatcttagcaaaaatagatttctttcaagtatgcaagagttagaaagaatggtgaatggtgcgcatcattcttcattttaggtaacaagcaaaa |
43051104 |
T |
|
| Q |
107 |
tacatatatttttct-ttattattgagtaatagtcatgttgatgatctataatctatttcgggagagagataagaataggaatagtaaatagagagagta |
205 |
Q |
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|||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43051105 |
tacacatatttttttattattattgagtaatagtcatgttgatgatctataatctatttcgggagagagataagaataggaatagtaaatagagagagta |
43051204 |
T |
|
| Q |
206 |
gttagttgagtcctaaaatgaaggagaaggtaaatgagtggcaacaattgaatggaggtaaagcgtgcatcatcactcacccatcatccaattccattcc |
305 |
Q |
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| T |
43051205 |
gttagttgagtcctaaaatgaaggagaaggtaaatgagtggcaacaattgaatggaggtaaagcgtgcatcatcactcacccatcatccaattccattcc |
43051304 |
T |
|
| Q |
306 |
aacccttatttaaaaacaatatttgaaggtcacaatca-----cattacattacaacaacactaaacaacaagaagaaaaaaggaacaaattttgaagga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43051305 |
aacccttatttaaaaacaatatttgaaggtcacaatcatattacattacattacaacaacactacacaacaagaagaaaaaaggaacaaattttgaagga |
43051404 |
T |
|
| Q |
401 |
caaaatgtcgtggcaaacttacgttgatgaacatttgatgtgtgatattgatggcaccggacatcacctatctgccgctgccatcattggccatgatggc |
500 |
Q |
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| T |
43051405 |
caaaatgtcgtggcaaacttacgttgatgaacatttgatgtgtgatattgatggcaccggacaccacctatctgccgctgccatcattggccatgatggc |
43051504 |
T |
|
| Q |
501 |
tctgtttgggctcagagctcttccttccctcaggtatattcatcattacattcccacatgaaactattcttggtcattcattgcgtatttgaagattaga |
600 |
Q |
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| T |
43051505 |
tctgtttgggctcagagctcttccttccctcaggtatattcatcattacattcccacatgaaactattcttggtcattcattgcgtatttgaagattaga |
43051604 |
T |
|
| Q |
601 |
ttttgattaggaggtgcacatattactattatgatcaagtgaaattgctctaatcaatttttatttatgattatttttcagattaagcctcaagagaaca |
700 |
Q |
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| T |
43051605 |
ttttgattaggaggtgcacatattactattatgatcaagtgaaattgctctaatcaatttttatttatgattatttttcagattaagcctcaagagaaca |
43051704 |
T |
|
| Q |
701 |
ctgatattatgaaagattttgacgaacctggtcatcttgctcctacgggcttgcaccttgcaggagtcaaatacatggtcatccaaggagagtctggtgc |
800 |
Q |
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| T |
43051705 |
ctgatattatgaaagattttgacgaacctggtcatcttgctcctacgggcttgcaccttgcaggagtcaaatacatggtcatccaaggagagtctggtgc |
43051804 |
T |
|
| Q |
801 |
tgtcatcc |
808 |
Q |
| |
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|||||||| |
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| T |
43051805 |
tgtcatcc |
43051812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 6e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 400 - 536
Target Start/End: Complemental strand, 34173974 - 34173838
Alignment:
| Q |
400 |
acaaaatgtcgtggcaaacttacgttgatgaacatttgatgtgtgatattgatggcaccggacatcacctatctgccgctgccatcattggccatgatgg |
499 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| || |||||||| | || |||||||| | |||||||| || |
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| T |
34173974 |
acaaaatgtcgtggcaaacttatgtggatgaacatttgatgtgtgatatcgatggcactggtcatcacctcaccgcggctgccattctcggccatgacgg |
34173875 |
T |
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| Q |
500 |
ctctgtttgggctcagagctcttccttccctcaggta |
536 |
Q |
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|||||||||||||||||| |||| |||||||||||| |
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| T |
34173874 |
ttctgtttgggctcagagcacttcattccctcaggta |
34173838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 674 - 806
Target Start/End: Complemental strand, 34173209 - 34173077
Alignment:
| Q |
674 |
tttttcagattaagcctcaagagaacactgatattatgaaagattttgacgaacctggtcatcttgctcctacgggcttgcaccttgcaggagtcaaata |
773 |
Q |
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|||| ||| |||||||| | |||| |||| ||| ||||||||||| |||||||| || |||||||| ||||| ||| ||||||||| | | |||| || |
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| T |
34173209 |
ttttacagtttaagcctgatgagattactggtatcatgaaagatttcgacgaaccaggacatcttgcacctactggcatgcaccttggggaaatcaagta |
34173110 |
T |
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| Q |
774 |
catggtcatccaaggagagtctggtgctgtcat |
806 |
Q |
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| T |
34173109 |
catggttattcaaggagagcctggagctgtcat |
34173077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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