View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13243_high_21 (Length: 252)

Name: NF13243_high_21
Description: NF13243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13243_high_21
NF13243_high_21
[»] chr3 (14 HSPs)
chr3 (83-252)||(35644591-35644760)
chr3 (13-83)||(33214442-33214512)
chr3 (13-82)||(27073103-27073172)
chr3 (3-83)||(33214624-33214704)
chr3 (3-82)||(33219072-33219151)
chr3 (3-80)||(10598810-10598887)
chr3 (21-83)||(27072912-27072974)
chr3 (3-84)||(36274310-36274391)
chr3 (5-82)||(36635425-36635502)
chr3 (5-84)||(19580497-19580576)
chr3 (13-82)||(36274120-36274188)
chr3 (21-82)||(10599001-10599062)
chr3 (14-79)||(36635241-36635305)
chr3 (24-82)||(11651000-11651058)
[»] chr1 (25 HSPs)
chr1 (3-84)||(10227897-10227978)
chr1 (3-78)||(19059378-19059453)
chr1 (13-82)||(10227712-10227781)
chr1 (5-83)||(23346418-23346496)
chr1 (13-82)||(26552187-26552256)
chr1 (5-82)||(48871424-48871501)
chr1 (4-85)||(28217527-28217607)
chr1 (5-85)||(28217706-28217786)
chr1 (10-82)||(48752586-48752657)
chr1 (2-82)||(50893147-50893226)
chr1 (4-82)||(48871247-48871324)
chr1 (3-80)||(26551992-26552069)
chr1 (5-82)||(50892963-50893040)
chr1 (4-84)||(7062183-7062262)
chr1 (11-82)||(42180571-42180641)
chr1 (4-82)||(4156892-4156969)
chr1 (5-82)||(41833874-41833951)
chr1 (5-81)||(39669245-39669321)
chr1 (11-82)||(41834069-41834139)
chr1 (6-81)||(50905100-50905175)
chr1 (24-73)||(19059584-19059633)
chr1 (4-73)||(23346607-23346675)
chr1 (5-81)||(50904992-50905070)
chr1 (5-51)||(7062038-7062084)
chr1 (5-51)||(42180759-42180805)
[»] chr2 (22 HSPs)
chr2 (3-82)||(31860079-31860158)
chr2 (21-84)||(13280038-13280101)
chr2 (13-84)||(36059282-36059353)
chr2 (3-82)||(42028763-42028842)
chr2 (16-90)||(7317833-7317907)
chr2 (13-82)||(42028578-42028647)
chr2 (16-84)||(31860283-31860351)
chr2 (5-84)||(15332849-15332928)
chr2 (21-82)||(13279840-13279901)
chr2 (3-82)||(2059490-2059569)
chr2 (2-81)||(3671822-3671900)
chr2 (13-83)||(2059679-2059749)
chr2 (3-84)||(7317633-7317714)
chr2 (13-82)||(16115046-16115115)
chr2 (5-82)||(31470587-31470663)
chr2 (3-82)||(16115229-16115308)
chr2 (13-82)||(38085967-38086035)
chr2 (2-82)||(31470762-31470841)
chr2 (25-82)||(15330449-15330505)
chr2 (5-82)||(38086154-38086231)
chr2 (5-82)||(3672010-3672087)
chr2 (52-83)||(36059247-36059278)
[»] scaffold0214 (2 HSPs)
scaffold0214 (3-82)||(11812-11891)
scaffold0214 (5-78)||(11630-11703)
[»] chr5 (28 HSPs)
chr5 (13-84)||(26534693-26534764)
chr5 (3-82)||(26534506-26534585)
chr5 (13-82)||(130443-130512)
chr5 (3-83)||(130253-130333)
chr5 (3-82)||(8323707-8323786)
chr5 (13-80)||(8323903-8323970)
chr5 (3-82)||(42630711-42630790)
chr5 (13-82)||(791592-791661)
chr5 (5-82)||(33377835-33377912)
chr5 (2-82)||(35454451-35454530)
chr5 (5-84)||(5146690-5146769)
chr5 (5-84)||(35454637-35454715)
chr5 (25-82)||(791810-791867)
chr5 (21-82)||(6518203-6518264)
chr5 (10-82)||(14388512-14388583)
chr5 (5-84)||(8489121-8489200)
chr5 (13-84)||(42630902-42630973)
chr5 (14-84)||(14069859-14069928)
chr5 (5-87)||(19898941-19899023)
chr5 (5-82)||(13823335-13823412)
chr5 (2-79)||(19897228-19897304)
chr5 (2-82)||(5146504-5146583)
chr5 (24-84)||(6518409-6518468)
chr5 (5-82)||(40881792-40881867)
chr5 (5-82)||(228717-228794)
chr5 (14-85)||(13823147-13823217)
chr5 (21-79)||(228987-229044)
chr5 (5-65)||(40882006-40882066)
[»] chr4 (14 HSPs)
chr4 (4-82)||(3102726-3102804)
chr4 (3-84)||(3102538-3102619)
chr4 (13-82)||(40534158-40534227)
chr4 (3-81)||(13690216-13690294)
chr4 (3-88)||(9231574-9231659)
chr4 (3-84)||(40533961-40534042)
chr4 (11-85)||(5121000-5121074)
chr4 (13-83)||(11147013-11147083)
chr4 (5-84)||(18381496-18381575)
chr4 (5-88)||(18936670-18936752)
chr4 (5-84)||(37177813-37177892)
chr4 (5-83)||(18936864-18936942)
chr4 (21-63)||(9231783-9231825)
chr4 (4-85)||(11147211-11147291)
[»] scaffold0140 (1 HSPs)
scaffold0140 (4-95)||(15836-15925)
[»] chr6 (8 HSPs)
chr6 (3-83)||(33022163-33022243)
chr6 (13-81)||(33022363-33022431)
chr6 (4-81)||(7789856-7789933)
chr6 (4-84)||(21389208-21389287)
chr6 (5-82)||(21389021-21389098)
chr6 (4-71)||(7789678-7789744)
chr6 (2-81)||(29859734-29859813)
chr6 (5-81)||(28472548-28472624)
[»] chr8 (12 HSPs)
chr8 (4-82)||(2814430-2814508)
chr8 (13-82)||(37994903-37994972)
chr8 (3-82)||(37994708-37994787)
chr8 (5-87)||(14193512-14193593)
chr8 (5-86)||(397192-397273)
chr8 (3-84)||(44036812-44036893)
chr8 (13-84)||(41539966-41540036)
chr8 (13-83)||(41539769-41539839)
chr8 (4-84)||(2814241-2814320)
chr8 (14-82)||(397007-397074)
chr8 (5-84)||(14193322-14193400)
chr8 (24-66)||(25101746-25101788)
[»] scaffold0135 (2 HSPs)
scaffold0135 (3-88)||(37440-37525)
scaffold0135 (21-63)||(37649-37691)
[»] chr7 (10 HSPs)
chr7 (14-84)||(7298833-7298902)
chr7 (5-82)||(7298635-7298712)
chr7 (5-82)||(40521203-40521280)
chr7 (4-84)||(40521014-40521093)
chr7 (13-84)||(19805609-19805680)
chr7 (22-88)||(19804791-19804857)
chr7 (2-82)||(28948990-28949069)
chr7 (4-82)||(16979604-16979681)
chr7 (10-79)||(46567960-46568028)
chr7 (5-56)||(46568145-46568196)


Alignment Details
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 83 - 252
Target Start/End: Complemental strand, 35644760 - 35644591
Alignment:
Q  83 ttaattttttatgattggttcaattttttggaaataacaaggttaacgtatttgaaaatgtatgggtttgaagtaaatattggataagttatattagagc 182  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||| ||||||||||||||||||||| |||||||||||||||||    
T  35644760 ttaattttttatgattggttcaattttttggaaataacgaggttatcgtatttaaaaatgcatgggtttgaagtaaatattgaataagttatattagagc 35644661  T
Q  183 aacaattagatatgtcaaataaacgagaccttgagttgtagcacaaataggtctacttggtaaacatcat 252  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35644660 aacaattagatatgtcaaataaacgagacattgagttgtagcacaaataggtctacttggtaaacatcat 35644591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 33214512 - 33214442
Alignment:
Q  13 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 83  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33214512 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 33214442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 27073103 - 27073172
Alignment:
Q  13 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27073103 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 27073172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 33214624 - 33214704
Alignment:
Q  3 gaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 83  Q
    |||||| || ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33214624 gaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaagaatttctct 33214704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 33219151 - 33219072
Alignment:
Q  3 gaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||||| |||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33219151 gaaaaacaatgacgaatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 33219072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 10598887 - 10598810
Alignment:
Q  3 gaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttc 80  Q
    |||||| || ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10598887 gaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaatttc 10598810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 27072974 - 27072912
Alignment:
Q  21 atgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 83  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27072974 atgttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaagaatttctct 27072912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 36274310 - 36274391
Alignment:
Q  3 gaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    |||||| || ||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||    
T  36274310 gaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaagatgataggttagattcgttcctacataagaatttctctt 36274391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 36635425 - 36635502
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||| |||||||||| |||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  36635425 aaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctc 36635502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 19580497 - 19580576
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    |||| |||||| ||| |||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||    
T  19580497 aaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctatacaagaatttctctt 19580576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 36274188 - 36274120
Alignment:
Q  13 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  36274188 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaa-aatttctc 36274120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 10599001 - 10599062
Alignment:
Q  21 atgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||    
T  10599001 atgttttaatttgttgtttgtaaggatgatatgttaggttcgtttccacacaagaatttctc 10599062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 36635305 - 36635241
Alignment:
Q  14 acgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 79  Q
    |||||| |||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||    
T  36635305 acgtgtcatgttttaatttgttgtttgtaacaatgatag-ttaggttcgttcctacacaagaattt 36635241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 11651058 - 11651000
Alignment:
Q  24 ttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||||| |||||||||||||| |||||| ||||||||||||| || |||||||||||||    
T  11651058 ttttaaattgttgtttgtaagaatgatatgttaggttcgttcataaacaagaatttctc 11651000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 10227897 - 10227978
Alignment:
Q  3 gaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10227897 gaaaaataatgatgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 10227978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 19059453 - 19059378
Alignment:
Q  3 gaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 78  Q
    |||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19059453 gaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 19059378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 10227781 - 10227712
Alignment:
Q  13 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10227781 gacgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctc 10227712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 23346496 - 23346418
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 83  Q
    |||| |||||||||| |||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  23346496 aaaaaaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctct 23346418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 26552187 - 26552256
Alignment:
Q  13 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26552187 gacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgatcctacacaagaatttctc 26552256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 48871424 - 48871501
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||| |||||||||  |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  48871424 aaaacaatgacgtgcaatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 48871501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 28217607 - 28217527
Alignment:
Q  4 aaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctta 85  Q
    ||||| |||||||||| |||||||||||||||||||||||| ||||||  ||||||||||||||||||| ||||||||||||    
T  28217607 aaaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-attaggttcgttcctacacaggaatttctctta 28217527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 28217706 - 28217786
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctta 85  Q
    |||| ||||| |||| ||||||| |||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||    
T  28217706 aaaacaatgatgtgtcatgttttgatttgttgtttgtaagaatgatatgttaggttcgttcctacacaataatttctctta 28217786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 48752586 - 48752657
Alignment:
Q  10 aatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||||||||| |||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||    
T  48752586 aatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctc 48752657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 50893147 - 50893226
Alignment:
Q  2 agaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||||| ||||| |||| |||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  50893147 agaaaaaaaatgatgtgtcatgttttaatttgttgtttgtaataatgata-gttaggttcgttcctacacaagaatttctc 50893226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 48871324 - 48871247
Alignment:
Q  4 aaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||| ||||| |||| ||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||    
T  48871324 aaaaaaaatgatgtgtcatgttttaatttgttatttgtaagaatgatag-ttaggttcgttcctacacaagaatttctc 48871247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 26552069 - 26551992
Alignment:
Q  3 gaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttc 80  Q
    |||||| || ||||||  || ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  26552069 gaaaaacaacgacgtgccatattttaattttttgtttgtaaggatgataggttagattcgttcctacacaagaatttc 26551992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 50893040 - 50892963
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||| |||||||||| |||||||||||||||||||||||| |||||| |||| ||||||| |||||||| ||||||||    
T  50893040 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaagttcgttgctacacaaaaatttctc 50892963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 7062183 - 7062262
Alignment:
Q  4 aaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    ||||| |||||||||| || ||||||||||||||||||||  |||||| ||||||||||||||||||||| ||||||||||    
T  7062183 aaaaaaaatgacgtgtcatattttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaaaaatttctctt 7062262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 42180641 - 42180571
Alignment:
Q  11 atgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||||||| |||||||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||    
T  42180641 atgacgtgtcatgttttaatttgttgtttgtaataatgctag-ttaggttcgttcctacacaagaatttctc 42180571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 4156969 - 4156892
Alignment:
Q  4 aaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||| |||||||||| |||||||||||| || |||||||| |||||| ||||||||| ||||||||||||||||||||    
T  4156969 aaaaaaaatgacgtgtcatgttttaatttattatttgtaagaatgata-gttaggttccttcctacacaagaatttctc 4156892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 41833951 - 41833874
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||||||||||||| ||||||||||||||||| |||||| ||||||  |||| |||||| ||| |||||||||||||    
T  41833951 aaaataatgacgtgtcatgttttaatttgttgtgtgtaagaatgatatattagattcgtttctatacaagaatttctc 41833874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 39669245 - 39669321
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 81  Q
    |||| ||| |||||| ||||||||||||||| |||||||| |||||| |||| ||||||| ||||||||||||||||    
T  39669245 aaaacaataacgtgtcatgttttaatttgttctttgtaagaatgatatgttaagttcgtttctacacaagaatttct 39669321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 41834069 - 41834139
Alignment:
Q  11 atgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||||||| |||||||||||||||||||||||  ||| || |||| |||||||||||||||||||||||||    
T  41834069 atgacgtgtcatgttttaatttgttgtttgtaataatgcta-gttatgttcgttcctacacaagaatttctc 41834139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 50905100 - 50905175
Alignment:
Q  6 aaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 81  Q
    |||||||||||| | |||||||||||||||||||||||| |||||| ||||| ||||||  ||||||| |||||||    
T  50905100 aaataatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttagattcgtttttacacaaaaatttct 50905175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 19059584 - 19059633
Alignment:
Q  24 ttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaa 73  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  19059584 ttttaatttgttctttataaggatgataggttaggttcgttcctacacaa 19059633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 23346607 - 23346675
Alignment:
Q  4 aaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaa 73  Q
    ||||| |||||| ||| |||||||||||| ||||||||||| |||||| |||||||||||||||||||||    
T  23346607 aaaaaaaatgacatgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaa 23346675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 50905070 - 50904992
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggt--taggttcgttcctacacaagaatttct 81  Q
    |||| |||||||||| ||||||||| |||||||||||||  ||||||  |  |||||||||||||||||||||||||||    
T  50905070 aaaacaatgacgtgtcatgttttaacttgttgtttgtaaaaatgatatatattaggttcgttcctacacaagaatttct 50904992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 7062084 - 7062038
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgata 51  Q
    |||| |||||||||| |||||||||||||||||||||||| ||||||    
T  7062084 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgata 7062038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 42180759 - 42180805
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgata 51  Q
    |||||||||| |||| |||||||| ||||||||||||||| ||||||    
T  42180759 aaaataatgatgtgtcatgttttagtttgttgtttgtaagaatgata 42180805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 31860158 - 31860079
Alignment:
Q  3 gaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31860158 gaaaaataatgacgtgtcatgttttaatttgttgtttataaggatgataggttaggttcgttcctacacaagaatttctc 31860079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 13280038 - 13280101
Alignment:
Q  21 atgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13280038 atgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 13280101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 36059282 - 36059353
Alignment:
Q  13 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36059282 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctctt 36059353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 42028763 - 42028842
Alignment:
Q  3 gaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||||| || ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42028763 gaaaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 42028842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 7317833 - 7317907
Alignment:
Q  16 gtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcttaatttt 90  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7317833 gtgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcttattttt 7317907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 42028647 - 42028578
Alignment:
Q  13 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42028647 gacgtgtcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaatttctc 42028578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 31860283 - 31860351
Alignment:
Q  16 gtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31860283 gtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctctt 31860351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 15332849 - 15332928
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    |||| |||||||||| |||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  15332849 aaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctctt 15332928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 13279901 - 13279840
Alignment:
Q  21 atgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13279901 atgttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaagaatttctc 13279840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 2059569 - 2059490
Alignment:
Q  3 gaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||||| ||||| |||| || ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2059569 gaaaaacaatgaagtgtcatattttagtttgttgtttgtaaggatgataggttaggttcgttcctacccaagaatttctc 2059490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 3671900 - 3671822
Alignment:
Q  2 agaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 81  Q
    ||||||| ||||| |||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  3671900 agaaaaaaaatgatgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttct 3671822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 2059679 - 2059749
Alignment:
Q  13 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 83  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  2059679 gacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttccaacacaataatttctct 2059749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 7317714 - 7317633
Alignment:
Q  3 gaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    |||||| || ||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||| | ||||||||    
T  7317714 gaaaaacaacgacgtgtcatgttttagtttgttgttagtaaggatgataggttaggttcgttcctacacaaaagtttctctt 7317633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 16115115 - 16115046
Alignment:
Q  13 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  16115115 gacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcttacacaaaaatttctc 16115046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 31470663 - 31470587
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||| |||||||||| |||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  31470663 aaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaagaatttctc 31470587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 16115229 - 16115308
Alignment:
Q  3 gaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||||| ||||| |||| || ||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  16115229 gaaaaacaatgaagtgtcatattttagtttgttgtttgtaagaatgataggttaggttcgttcctacacaaaaatttctc 16115308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 38086035 - 38085967
Alignment:
Q  13 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||||| |||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  38086035 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttagtttcgttcctacacaagaatttctc 38085967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 31470762 - 31470841
Alignment:
Q  2 agaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||||| ||||| |||| ||  |||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  31470762 agaaaaaaaatgatgtgtcattatttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaaaaatttctc 31470841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 15330505 - 15330449
Alignment:
Q  25 tttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  15330505 tttaatttattgtttgtaagaatgatag-ttaggttcgttcctacacaagaatttctc 15330449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 38086154 - 38086231
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||| |||||||| | || ||||||||||||||||||||| |||||| |||||||| || ||||||||| ||||||||    
T  38086154 aaaacaatgacgtatcatattttaatttgttgtttgtaagaatgatatgttaggtttgtccctacacaaaaatttctc 38086231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 3672010 - 3672087
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||| ||||||||||||| |||||||||||| |||||||  ||||||  |||| ||||||||| || |||||||||||    
T  3672010 aaaacaatgacgtgttatattttaatttgttatttgtaaaaatgatatattagattcgttcctccataagaatttctc 3672087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 83
Target Start/End: Complemental strand, 36059278 - 36059247
Alignment:
Q  52 ggttaggttcgttcctacacaagaatttctct 83  Q
    ||||||||||||||||||||||||||||||||    
T  36059278 ggttaggttcgttcctacacaagaatttctct 36059247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 11812 - 11891
Alignment:
Q  3 gaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11812 gaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 11891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 11703 - 11630
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 78  Q
    |||| ||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11703 aaaacaatgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatt 11630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 26534693 - 26534764
Alignment:
Q  13 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26534693 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 26534764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 26534585 - 26534506
Alignment:
Q  3 gaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||||| || ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26534585 gaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaagaatttctc 26534506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 130443 - 130512
Alignment:
Q  13 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  130443 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttactacaaaagaatttctc 130512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 130333 - 130253
Alignment:
Q  3 gaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 83  Q
    |||||| || ||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  130333 gaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgacaggttaggttcgttcctacacaagaatttctct 130253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 8323786 - 8323707
Alignment:
Q  3 gaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||||| || ||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8323786 gaaaaacaacgacgtgtcatgttttaatttattgtttgtaaagatgataggttaggttcgttcctacacaagaatttctc 8323707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 8323903 - 8323970
Alignment:
Q  13 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttc 80  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8323903 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttc 8323970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 42630790 - 42630711
Alignment:
Q  3 gaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||||| ||||| |||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42630790 gaaaaacaatgaagtgtcatgttttagtttgttgtttgtaaggatgataggttaggttcgttcatacacaagaatttctc 42630711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 791661 - 791592
Alignment:
Q  13 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  791661 gacgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaaaaatttctc 791592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 33377835 - 33377912
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||| |||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||    
T  33377835 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacataagaatttctc 33377912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 35454530 - 35454451
Alignment:
Q  2 agaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||||| |||||||||| |||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||    
T  35454530 agaaaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctc 35454451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 5146690 - 5146769
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    |||| |||||||||| |||||||||||||||||||||||| ||||||  ||||||||||| |||||||||||||||||||    
T  5146690 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtttctacacaagaatttctctt 5146769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 35454637 - 35454715
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    |||| |||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||    
T  35454637 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttttctt 35454715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 791810 - 791867
Alignment:
Q  25 tttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  791810 tttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaagaatttctc 791867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 6518264 - 6518203
Alignment:
Q  21 atgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  6518264 atgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 6518203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 14388512 - 14388583
Alignment:
Q  10 aatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||||||||| |||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||    
T  14388512 aatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggtttgttcctacacaagaatttctc 14388583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 8489200 - 8489121
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    |||| |||||||||| || ||||||||||||||||||||| |||||| ||||| || |||||||||||||||||||||||    
T  8489200 aaaacaatgacgtgtcatattttaatttgttgtttgtaagaatgatatgttagatttgttcctacacaagaatttctctt 8489121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 42630902 - 42630973
Alignment:
Q  13 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    ||||||| || ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  42630902 gacgtgtcatattttaatttattgtttgtaaggatgataggttaggttcgtgcctacacaagaatttttctt 42630973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 14069928 - 14069859
Alignment:
Q  14 acgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    |||||| ||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||    
T  14069928 acgtgtcatgttttaatttgttgtttataagaatgatag-ttaggttcgttcctacacaagaatttctctt 14069859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 19898941 - 19899023
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcttaat 87  Q
    |||| |||||| ||| ||||||||||||||||||| |||  |||||| |||||||||||||||||||||||||||||| ||||    
T  19898941 aaaacaatgacatgtcatgttttaatttgttgtttataaaaatgatatgttaggttcgttcctacacaagaatttctcataat 19899023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 13823335 - 13823412
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||| |||||||||| ||||||||||||||| |||||||  |||||| |||| |||||||||||||||||||||||||    
T  13823335 aaaacaatgacgtgtcatgttttaatttgttatttgtaaaaatgatatgttaagttcgttcctacacaagaatttctc 13823412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 19897304 - 19897228
Alignment:
Q  2 agaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 79  Q
    |||||||  ||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||    
T  19897304 agaaaaaatatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaataattt 19897228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 5146583 - 5146504
Alignment:
Q  2 agaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||||| ||| |||||| |||||||||||| ||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  5146583 agaaaaaaaataacgtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaataatttctc 5146504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 6518409 - 6518468
Alignment:
Q  24 ttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||    
T  6518409 ttttaatttgttgtttgtaagaatgatag-ttaggttcgttactacacaagaatttctctt 6518468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 40881867 - 40881792
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||| |||||||||| |||||||||||| ||||||||||| || ||  ||||||||||||||||||||| ||||||||    
T  40881867 aaaacaatgacgtgtcatgttttaatttattgtttgtaagaataat--gttaggttcgttcctacacaacaatttctc 40881792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 228794 - 228717
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||| ||| |||||| |||||||||||| |||||| |||| |||||| ||||||||||||||||||||  ||||||||    
T  228794 aaaacaataacgtgtcatgttttaatttattgtttataagaatgatatgttaggttcgttcctacacagtaatttctc 228717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 13823217 - 13823147
Alignment:
Q  14 acgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctta 85  Q
    |||||| |||||||| ||| |||||| || | ||||||| ||||||||||||||||||||||||||||||||    
T  13823217 acgtgtcatgttttagtttattgtttatacgaatgatag-ttaggttcgttcctacacaagaatttctctta 13823147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 228987 - 229044
Alignment:
Q  21 atgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 79  Q
    |||||||||||||||||||||||| |||||| |||| ||||||| |||||||| |||||    
T  228987 atgttttaatttgttgtttgtaagaatgata-gttatgttcgtttctacacaaaaattt 229044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 40882006 - 40882066
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttc 65  Q
    |||| ||| |||||| || ||||||||||||||||||||| |||||| ||||| |||||||    
T  40882006 aaaacaataacgtgtcatattttaatttgttgtttgtaagaatgatatgttagattcgttc 40882066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 3102726 - 3102804
Alignment:
Q  4 aaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3102726 aaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 3102804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 3102619 - 3102538
Alignment:
Q  3 gaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    |||||| || ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3102619 gaaaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 3102538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 40534158 - 40534227
Alignment:
Q  13 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40534158 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 40534227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 13690294 - 13690216
Alignment:
Q  3 gaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 81  Q
    |||||| || ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13690294 gaaaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 13690216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 9231659 - 9231574
Alignment:
Q  3 gaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcttaatt 88  Q
    |||||| || ||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||    
T  9231659 gaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaagaatttctcataatt 9231574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 40534042 - 40533961
Alignment:
Q  3 gaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    |||||| || ||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  40534042 gaaaaacaacgacgtatcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaatttctctt 40533961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 5121000 - 5121074
Alignment:
Q  11 atgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctta 85  Q
    |||| |||| |||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||    
T  5121000 atgatgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggtttgttcctacacaagaatttctctta 5121074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 11147083 - 11147013
Alignment:
Q  13 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 83  Q
    ||||||| |||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||    
T  11147083 gacgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgttcctacacaagaatttctct 11147013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 18381496 - 18381575
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    |||| ||||| |||| |||||||||||||||| ||||||| |||| | ||||||||||||||||||||||||||||||||    
T  18381496 aaaacaatgatgtgtcatgttttaatttgttgcttgtaagaatgaaatgttaggttcgttcctacacaagaatttctctt 18381575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 18936752 - 18936670
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcttaatt 88  Q
    |||| |||||||| | |||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||||||||    
T  18936752 aaaaaaatgacgtatcatgttttaatttgttgtttgtaagaatgata-gttatgttcgttcatacacaagaatttctcttaatt 18936670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 37177813 - 37177892
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    |||| |||||||| | |||||||||||||||||||||||| |||||| |||| ||||||||||| |||||||||||||||    
T  37177813 aaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttatgttcgttcctagacaagaatttctctt 37177892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 18936864 - 18936942
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 83  Q
    |||| |||||||||| |||||||||||| ||||||||||| ||||||  ||||||||||||||| ||||||||||||||    
T  18936864 aaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatattaggttcgttcctagacaagaatttctct 18936942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 9231783 - 9231825
Alignment:
Q  21 atgttttaatttgttgtttgtaaggatgataggttaggttcgt 63  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  9231783 atgttttaatttgttgtttgtaaggatgataggttaggttcgt 9231825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 11147211 - 11147291
Alignment:
Q  4 aaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctta 85  Q
    ||||| |||||| ||| || ||||||||| ||||||||||| || ||| ||||| |||||| ||||| |||||||| |||||    
T  11147211 aaaaaaaatgacatgtcatattttaatttattgtttgtaagaataata-gttagattcgtttctacataagaatttttctta 11147291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 15925 - 15836
Alignment:
Q  4 aaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcttaattttttatg 95  Q
    ||||||||| |||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||  ||||||||||    
T  15925 aaaaataataacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctct--attttttatg 15836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 33022243 - 33022163
Alignment:
Q  3 gaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 83  Q
    |||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33022243 gaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaataatttctct 33022163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 33022363 - 33022431
Alignment:
Q  13 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 81  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33022363 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 33022431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 7789856 - 7789933
Alignment:
Q  4 aaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 81  Q
    ||||| |||||||||| |||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||    
T  7789856 aaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcattcctacacaagaatttct 7789933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 21389208 - 21389287
Alignment:
Q  4 aaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    ||||| |||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||    
T  21389208 aaaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttatctt 21389287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 21389098 - 21389021
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||| |||||||| | |||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||    
T  21389098 aaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacagaagaatttctc 21389021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 7789744 - 7789678
Alignment:
Q  4 aaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacac 71  Q
    ||||| |||||| ||| |||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  7789744 aaaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacac 7789678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 29859734 - 29859813
Alignment:
Q  2 agaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 81  Q
    ||||||| ||| |||||||||| ||||||||||||||| |||  ||||||  ||||||||||||||||| || |||||||    
T  29859734 agaaaaaaaataacgtgttatgatttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 29859813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 28472548 - 28472624
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttct 81  Q
    |||| ||| |||||||||| ||||||||||||||| |||  ||||||  ||||||||||||||||| || |||||||    
T  28472548 aaaaaaataacgtgttatgatttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 28472624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 2814430 - 2814508
Alignment:
Q  4 aaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||| |||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  2814430 aaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 2814508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 37994903 - 37994972
Alignment:
Q  13 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37994903 gacgtgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 37994972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 37994787 - 37994708
Alignment:
Q  3 gaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||||| || ||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37994787 gaaaaacaacgacgtatcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 37994708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 14193512 - 14193593
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcttaat 87  Q
    |||| |||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||    
T  14193512 aaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctcataat 14193593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 397192 - 397273
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcttaa 86  Q
    |||| |||||||||| ||||||||||||||||||| |||| |||||| |||||||||||| |||||||||||||||||||||    
T  397192 aaaacaatgacgtgtcatgttttaatttgttgtttataagaatgatatgttaggttcgtttctacacaagaatttctcttaa 397273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 44036893 - 44036812
Alignment:
Q  3 gaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    |||||| || ||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  44036893 gaaaaacaacgacgtgtcatgtttgaatttgttgtttgtaaggatgataggttaggttcgtccctacacatgaatttctctt 44036812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 41539966 - 41540036
Alignment:
Q  13 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    ||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  41539966 gacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctctt 41540036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 41539839 - 41539769
Alignment:
Q  13 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctct 83  Q
    ||||||| || ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  41539839 gacgtgtcatattttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctct 41539769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 2814320 - 2814241
Alignment:
Q  4 aaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    ||||| || ||||||| ||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  2814320 aaaaaaaacgacgtgtcatgatttaatttgttgtttgtaagaatgatag-ttaggttcgttcctacacaagaatttctctt 2814241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 397074 - 397007
Alignment:
Q  14 acgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||||||||||||||||| ||||||||||| |||||| ||||||||||||||| ||||||||||||||    
T  397074 acgtgttatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctgcacaagaatttctc 397007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 14193400 - 14193322
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    |||| ||||| |||| |||||||||||||||||||||||  || ||| |||||||||||||||| |||| ||||||||||    
T  14193400 aaaacaatgatgtgtcatgttttaatttgttgtttgtaaaaataatatgttaggttcgttccta-acaaaaatttctctt 14193322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 25101788 - 25101746
Alignment:
Q  24 ttttaatttgttgtttgtaaggatgataggttaggttcgttcc 66  Q
    ||||| ||||||||||| ||| |||||||||||||||||||||    
T  25101788 ttttattttgttgtttgcaagaatgataggttaggttcgttcc 25101746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 37525 - 37440
Alignment:
Q  3 gaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcttaatt 88  Q
    |||||| || ||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||    
T  37525 gaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaagaatttctcataatt 37440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 37649 - 37691
Alignment:
Q  21 atgttttaatttgttgtttgtaaggatgataggttaggttcgt 63  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  37649 atgttttaatttgttgtttgtaaggatgataggttaggttcgt 37691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 7298833 - 7298902
Alignment:
Q  14 acgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  7298833 acgtgttatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctctt 7298902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 7298712 - 7298635
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||| |||||||||| |||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  7298712 aaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctc 7298635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 40521203 - 40521280
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    |||| ||||| |||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  40521203 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 40521280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 40521093 - 40521014
Alignment:
Q  4 aaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    |||||| ||||||||| || ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  40521093 aaaaattatgacgtgtcatattttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctctt 40521014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 19805609 - 19805680
Alignment:
Q  13 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctctt 84  Q
    ||||||| ||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||    
T  19805609 gacgtgtcatgttttaatttgttatttataaggatgataggttaagttcgttcctacacaagaatttctctt 19805680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 19804857 - 19804791
Alignment:
Q  22 tgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctcttaatt 88  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  19804857 tgtttcaatttgttgtttgtaaggataataggttaggttcgttcctacacaagaatttctcataatt 19804791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 28948990 - 28949069
Alignment:
Q  2 agaaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||||| |||||||||| |||||||||||| ||||||||||| |||||| ||||||||||||||||||||| ||||||||    
T  28948990 agaaaaaaaatgacgtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaaaaatttctc 28949069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 16979604 - 16979681
Alignment:
Q  4 aaaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 82  Q
    ||||| |||||||||| ||||||||||||||| |||||||| |||||| ||||| ||||||||||||||||||||||||    
T  16979604 aaaaaaaatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttagattcgttcctacacaagaatttctc 16979681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 46568028 - 46567960
Alignment:
Q  10 aatgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattt 79  Q
    |||||||||| |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||    
T  46568028 aatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaagttcgttcctacacaagaattt 46567960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 46568145 - 46568196
Alignment:
Q  5 aaaataatgacgtgttatgttttaatttgttgtttgtaaggatgataggtta 56  Q
    |||| ||||| |||| |||||||||||||||||||||||| |||||| ||||    
T  46568145 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatgtta 46568196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University