View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13243_high_24 (Length: 201)
Name: NF13243_high_24
Description: NF13243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13243_high_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 4360295 - 4360122
Alignment:
| Q |
13 |
gaaatgaagcagcagcagaagaggaaacactttatgttgttgttccattactcaaaacactttttctgatattgaattgaatcaagactcaaagtgtatt |
112 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4360295 |
gaaaagaagcagcagaagaagaggaaacactttatgttgttcttccattacacaaaacacttgttctgatattgaattgaatcaagactcaaagtgtatt |
4360196 |
T |
|
| Q |
113 |
gaattgatattgaattaaaacaagaatcaaaaaacttttcaaatattgaattgaattgttaaagagaaaccatg |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4360195 |
gaattgatattgaattaaaacaagaatcaaaagacttttcaaatattgaattgaattgttaaagagaaaccatg |
4360122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 4342761 - 4342687
Alignment:
| Q |
23 |
agcagcagaagaggaaacactttatgttgttgttccattactcaaaacactttttctgatattgaattgaatcaa |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4342761 |
agcagcagaagaggaaacactttatgttgttgttccattactcaaaacactttttctgatattgaattgaatcaa |
4342687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University