View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13243_high_4 (Length: 693)
Name: NF13243_high_4
Description: NF13243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13243_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 565; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 16 - 677
Target Start/End: Complemental strand, 27252190 - 27251530
Alignment:
| Q |
16 |
catcatctatgaggacgatttcgagtaaatggctatgagtttttgtctctccttttaattgggtgtatgttgagacatgattaagtacaaactcatagca |
115 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27252190 |
catcatctatgaggacaatttcgagtaaatggctatgagtttttgtctctccttttaattgggtgtatgttgagacatgattaagtacaaactcatagca |
27252091 |
T |
|
| Q |
116 |
aaagattttattgaagtcgtaaaggtgcatgtaatnnnnnnnnnnnnnnnnnnnnnnntagtctccaagactataaaatattacacatttttgacaaatt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
27252090 |
aaagattttattgaagtcgtaaaggtgcatgtaataaaacaaaacaaaaaatcaaaaatagtctccaagactataaaatattacacatttttgaataatt |
27251991 |
T |
|
| Q |
216 |
agtcttacagaataatattcatcctccgtcaacaccatcattaactgctagtgttgctgtctaacataacatatatcatcatattcactaccaacatttt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27251990 |
agtcttacagaataatattcatcctccgtcaacaccatcattaactgctagtgctgctgtctaacataacatatatcatcatattcactaccaacatttt |
27251891 |
T |
|
| Q |
316 |
tagtaagagtagcctttgacgaacaattccttcttggcttcctcggattcaccctcaccagtgtactttccaagttgagcaattgagttggacttggcgc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27251890 |
tagtaagagtagcctttgacgaacaattccttcttggcttcctcggattcaccctcaccagtgtactttccaagttgagcaattgagttggacttggcgc |
27251791 |
T |
|
| Q |
416 |
ggaaaagaagcgcttcttgagctgccttcacgttctctacgcggcctccccatgtcttcaatgcggtattttggagagctcttgcgtatgagaacgacac |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27251790 |
ggaaaagaagcgcttcttgagctgccttcacgttctctacgcggcctccccatgtcttcaatgcggtattttggagagctcttgcgtatgagaacgacac |
27251691 |
T |
|
| Q |
516 |
gtgccatgggtttggagattggttcatggcattcaagttgagggttgcttcaacctcagattgtccaccagacaaaaactatacatagcaagaatacaac |
615 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27251690 |
gtgccatgggtttggagattggttcatggcattcaagttgagggttgcttcaacctcagattgtccaccagacaaaaactatacatagc-agaatacaac |
27251592 |
T |
|
| Q |
616 |
tttggtaagaacgtgaacaaacaaagagtgaaatttgaaatacaaagaaagaataatgttat |
677 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27251591 |
tttagtaagaacgtgaacaaacaaagagtgaaatttgaaatacaaagaaagaataatgttat |
27251530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 174 - 677
Target Start/End: Complemental strand, 21196283 - 21195781
Alignment:
| Q |
174 |
tagtctccaagactataaaatattacacatttttgacaaattagtcttacagaataatattcatcctccgtcaacaccatcattaactgctagtgttgct |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21196283 |
tagtctccaagactataaaatattacacatttttgattaattagtcttacagaataatattcatcctccgtcaacaccatcattaactgctagtgctgct |
21196184 |
T |
|
| Q |
274 |
gtctaacataacatatatcatcatattcactaccaacatttttagtaagagtagcctttgacgaacaattccttcttggcttcctcggattcaccctcac |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21196183 |
gtctaacataacatatatcatcatattcactaccaacatttttagtaagagtagcctttgacgaacaattccttcttggcttcttcggattcaccctcac |
21196084 |
T |
|
| Q |
374 |
cagtgtactttccaagttgagcaattgagttggacttggcgcggaaaagaagcgcttcttgagctgccttcacgttctctacgcggcctccccatgtctt |
473 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21196083 |
cagtgtactttccaagttgagcaattgagttggacttggcgcggaaaagaagcgcttcttgagctgccttcacgttctctacgcggcctccccatgtctt |
21195984 |
T |
|
| Q |
474 |
caatgcggtattttggagagctcttgcgtatgagaacgacacgtgccatgggtttggagattggttcatggcattcaagttgagggttgcttcaacctca |
573 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21195983 |
caatgcggtattttggagagctcttgcgtatgagaacgacacgtgccatgggtttggagattggttcatggcattcaagttgagggttgcttcaacctca |
21195884 |
T |
|
| Q |
574 |
gattgtccaccagacaaaaactatacatagcaagaatacaactttggtaagaacgtgaacaaacaaagagtgaaatttgaaatacaaagaaagaataatg |
673 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21195883 |
gattgtccaccagacaaaaactatacatagc-agaatacagcttttgtaagaacgtgaacaaacaaagagtgaaatttgaaatacaaagaaagaataatg |
21195785 |
T |
|
| Q |
674 |
ttat |
677 |
Q |
| |
|
|||| |
|
|
| T |
21195784 |
ttat |
21195781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 319 - 596
Target Start/End: Complemental strand, 27268721 - 27268444
Alignment:
| Q |
319 |
taagagtagcctttgacgaacaattccttcttggcttcctcggattcaccctcaccagtgtactttccaagttgagcaattgagttggacttggcgcgga |
418 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| || |||| |
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|
| T |
27268721 |
taagagtatcctttgacaaacaattccttcttggcttcctcagattcaccctcaccagtgtactttccaagttgagcaagtgagttggacttagcacgga |
27268622 |
T |
|
| Q |
419 |
aaagaagcgcttcttgagctgccttcacgttctctacgcggcctccccatgtcttcaatgcggtattttggagagctcttgcgtatgagaacgacacgtg |
518 |
Q |
| |
|
|||| || |||||||| ||||||| |||||||||| ||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||| |
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|
| T |
27268621 |
aaaggagtgcttcttgtgctgcctgaacgttctctatgcggcctccccatgtcttcaatgcggtgttctggagagctcttgcatatgagaatgacacgtg |
27268522 |
T |
|
| Q |
519 |
ccatgggtttggagattggttcatggcattcaagttgagggttgcttcaacctcagattgtccaccagacaaaaacta |
596 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27268521 |
ccatgggtttggagattggttcatggcattcaagttgagcgttgcttcaacctcagattgtccaccagacaaaaacta |
27268444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 16 - 150
Target Start/End: Complemental strand, 21196447 - 21196314
Alignment:
| Q |
16 |
catcatctatgaggacgatttcgagtaaatggctatgagtttttgtctctccttttaattgggtgtatgttgagacatgattaagtacaaactcatagca |
115 |
Q |
| |
|
||||||| |||||||| | |||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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|
| T |
21196447 |
catcatcaatgaggacaacttcgagtaaatggctatgagttttggtctctccttttaattgggtttatgctgagacatgattaagtacaaactcatagca |
21196348 |
T |
|
| Q |
116 |
aaagattttattgaagtcgtaaaggtgcatgtaat |
150 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |
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| T |
21196347 |
aaagattttattgaagtcgtaaa-gtgcatgtaat |
21196314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 27268834 - 27268795
Alignment:
| Q |
174 |
tagtctccaagactataaaatattacacatttttgacaaa |
213 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
27268834 |
tagtctccaagactataaaacattacacaattttgacaaa |
27268795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 493 - 595
Target Start/End: Original strand, 49363995 - 49364097
Alignment:
| Q |
493 |
gctcttgcgtatgagaacgacacgtgccatgggtttggagattggttcatggcattcaagttgagggttgcttcaacctcagattgtccaccagacaaaa |
592 |
Q |
| |
|
|||| |||||||||||| ||||| ||||||||||| ||| ||||||||| ||||| | || || ||||||||||| || ||||||||||| ||||||| |
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| T |
49363995 |
gctcgtgcgtatgagaaagacacatgccatgggttgggactttggttcatagcattaagatttagagttgcttcaacttctgattgtccacctgacaaaa |
49364094 |
T |
|
| Q |
593 |
act |
595 |
Q |
| |
|
||| |
|
|
| T |
49364095 |
act |
49364097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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