View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13243_high_5 (Length: 631)
Name: NF13243_high_5
Description: NF13243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13243_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 280 - 612
Target Start/End: Complemental strand, 48658325 - 48657993
Alignment:
| Q |
280 |
cagcaacaaaagcacactctatgtaatgcacacatcctccccctggtaatcagcctctttccaatcaaagtgtccttcgactcaaccttcattctatcta |
379 |
Q |
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| T |
48658325 |
cagcaacaaaagcacactctatgtaatgcacacatcctccccctggtaatcagcctctttccaatcaaagtgtccttcgactcaaccttcattctatcta |
48658226 |
T |
|
| Q |
380 |
ctgcacccaacctccccgtgggaaattaaatggagtccacgagaagtaaagtaccgacaccaattaatacgattaatttcattgtcattgttgcaaaaga |
479 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48658225 |
ctgcacccaacctccccgtgggaaattaaatggagtccacgagaagtaaaggaccgacaccaattaatacgattaatttcattgtcattgttgcaaaaga |
48658126 |
T |
|
| Q |
480 |
gagcacacctattgttttactagcatataaatcttgttggatgtaattcacacattcattttgactcatcctccattctatgtactgcacacaacctctc |
579 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48658125 |
gagcacacctattgttttactagcatataaatcttgttggatgtaatgcacacattcattttgactcatcctccattctatgtactgcacacaacctctc |
48658026 |
T |
|
| Q |
580 |
cgttatgatcagattcaattcccattctaatcc |
612 |
Q |
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| T |
48658025 |
cgttatgatcagattcaattcccattctaatcc |
48657993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 107 - 281
Target Start/End: Complemental strand, 48658947 - 48658773
Alignment:
| Q |
107 |
agcaacaacactaaccattcaagagtaaagtggtcataaagtaatgggatagaaataaaaatgtaataacaaatccatagtaacttcgttcgttgttttt |
206 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48658947 |
agcaacaacactaaccattcaagagtaaagtggccataaagtaatgggatagaaataaaaatgtaataacaaatccatagtaacttcgttcgttgttttt |
48658848 |
T |
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| Q |
207 |
cgtttaaattttgccttactatctagcatttccgctttaggcaatctactagcaagtttgtacgtaaaattggca |
281 |
Q |
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| T |
48658847 |
cgtttaaattttgccttactatctagcatttccgctttaggcaatctactagcaagtttgtacgtaaaattggca |
48658773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 48626204 - 48626155
Alignment:
| Q |
18 |
ataagcactgctgatagtggaatatatttaccaagagtatttttaggtaa |
67 |
Q |
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| T |
48626204 |
ataagcactgctgatagtggaatatatttaccaagagtatttttatgtaa |
48626155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 100 - 237
Target Start/End: Original strand, 18545148 - 18545285
Alignment:
| Q |
100 |
acgaaacagcaacaacactaaccattcaagagtaaagtggtcataaagtaatgggatagaaataaaaatgtaataacaaatccatagtaacttcgttcgt |
199 |
Q |
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|||||||| |||||||||| |||||||||| ||||||||| |||||| |||| || | |||||||||||| ||||| |||||||| || ||||| |
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| T |
18545148 |
acgaaacaccaacaacacttaccattcaagggtaaagtggaaataaagaaatgatatgggggtaaaaatgtaatggcaaattcatagtaaagtcattcgt |
18545247 |
T |
|
| Q |
200 |
tgtttttcgtttaaattttgccttactatctagcattt |
237 |
Q |
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| T |
18545248 |
tgtttttcgtttagattcttccgtactatgtagcattt |
18545285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 237
Target Start/End: Complemental strand, 8025798 - 8025663
Alignment:
| Q |
102 |
gaaacagcaacaacactaaccattcaagagtaaagtggtcataaagtaatgggatagaaataaaaatgtaataacaaatccatagtaacttcgttcgttg |
201 |
Q |
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|||||| |||||||||| |||||||||| ||||||||| |||||| ||| | || | ||||||||||||| ||||| || ||||| || ||||||| |
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| T |
8025798 |
gaaacaccaacaacacttaccattcaagggtaaagtggaaataaagaaattgtatgggggtaaaaatgtaatagcaaattcacagtaaagtcattcgttg |
8025699 |
T |
|
| Q |
202 |
tttttcgtttaaattttgccttactatctagcattt |
237 |
Q |
| |
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||||||||||| ||| | || ||| || |||||||| |
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| T |
8025698 |
tttttcgtttagattcttccgtaccatgtagcattt |
8025663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 237
Target Start/End: Original strand, 3241554 - 3241689
Alignment:
| Q |
102 |
gaaacagcaacaacactaaccattcaagagtaaagtggtcataaagtaatgggatagaaataaaaatgtaataacaaatccatagtaacttcgttcgttg |
201 |
Q |
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|||||| |||||||||| |||||||||| ||||||||| |||||| ||| | || | ||||||||||||| ||||| || ||||| || ||||||| |
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| T |
3241554 |
gaaacaccaacaacacttaccattcaagggtaaagtggaaataaagaaattgtatgggggtaaaaatgtaatagcaaattcacagtaaagtcattcgttg |
3241653 |
T |
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| Q |
202 |
tttttcgtttaaattttgccttactatctagcattt |
237 |
Q |
| |
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||||||||||| ||| | || ||| || |||||||| |
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| T |
3241654 |
tttttcgtttagattcttccgtaccatgtagcattt |
3241689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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