View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13243_high_8 (Length: 413)
Name: NF13243_high_8
Description: NF13243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13243_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 403
Target Start/End: Original strand, 8738622 - 8739005
Alignment:
| Q |
19 |
gtttgagccttgggaattaccatgtatgtnnnnnnnncaaacctcgtctttattttctttgcaaacctagtaattattttcttataattttctttttgat |
118 |
Q |
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| T |
8738622 |
gtttgagccttgggaattaccatgtatgtaaaaaaa-caaacctcgtctttattttctttgcaaacctagtaattattttcttataattttctttttgat |
8738720 |
T |
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| Q |
119 |
ataatccttctttgtcagctcgttcgataataaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtt |
218 |
Q |
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| T |
8738721 |
ataatccttctttgtcagctcgttcgataataaaatcacatgacccggaatggtttttcttgtgtccttgtgattacaagtacgcaaagagtaaaaagtt |
8738820 |
T |
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| Q |
219 |
taaccgagcaacggagttagggttttggaaagctactggaattgaacatgatattaaaattcatggtaccgacaaagttatagcaactaagaagattctt |
318 |
Q |
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| T |
8738821 |
taaccgagcaacggagttagggttttggaaagctactggaattgaacatgatattaaaattcatggtaccgacaaagttatagcaactaagaagattctt |
8738920 |
T |
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| Q |
319 |
gttttctatttgaaagctaccggaaataaatgccctgttaggaccaattgggttatacatgagtatcatgatgctgtcacctttg |
403 |
Q |
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| T |
8738921 |
gttttctatttgaaagctaccggaaataaatgccatgttaggaccaactgggttatacatgagtatcatgatgctgtcacctttg |
8739005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 14372505 - 14372433
Alignment:
| Q |
149 |
taaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaa |
221 |
Q |
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| T |
14372505 |
taaaatcagatgacccagaatggtttttcttgtgtcctattgattacaagtatgcaaagagtaaaaggtttaa |
14372433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 8705222 - 8705294
Alignment:
| Q |
149 |
taaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaa |
221 |
Q |
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| T |
8705222 |
taaaatcagatgacccagaatggttttttttgtgtcctattgattataagtatgccaagagtaaaaggtttaa |
8705294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 8740276 - 8740370
Alignment:
| Q |
127 |
tctttgtcagctcgttcgataataaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaa |
221 |
Q |
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| T |
8740276 |
tctttttcagctcgttcagtgataaaatctgatgaccaagaatggtttttcttgtgtcctattgaatacaagtatgcaaagagtaaaaggtttaa |
8740370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 8723641 - 8723729
Alignment:
| Q |
133 |
tcagctcgttcgataataaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaa |
221 |
Q |
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| T |
8723641 |
tcagctcgttcggtgataaaatctgatgaccaagaatggtttttcttgtgccctattgaatacaagtatgcaaagagtaaaaggtttaa |
8723729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 259
Target Start/End: Original strand, 8722262 - 8722409
Alignment:
| Q |
112 |
ttttgatataatccttctttgtcagctcgttcgataataaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagta |
211 |
Q |
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| T |
8722262 |
ttttgatatattcgttctgtttcagctcattcagtgataagatccgatgactcggaatggtttttcttgtgtcctcgcaattacaagtatcaaaggtgta |
8722361 |
T |
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| Q |
212 |
aaaagtttaaccgagcaacggagttagggttttggaaagctactggaa |
259 |
Q |
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| T |
8722362 |
ataagtttaagagaggaacagagtttggattttggaaagctactggaa |
8722409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 8690920 - 8691015
Alignment:
| Q |
127 |
tctttgtcagctcgttcgataataaaatcatatgacccggaatggtttttcttgtgtccttgtgattataagtacgcaaagagtaaaaagtttaac |
222 |
Q |
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| T |
8690920 |
tctttttcagcttgttctttgataaaatccaatgatcccgaatggtttttcttttgtcctcgcgattacaaatacgcaaatagtaaaaggtttaac |
8691015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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