View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13243_low_11 (Length: 369)
Name: NF13243_low_11
Description: NF13243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13243_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 3 - 353
Target Start/End: Complemental strand, 39979472 - 39979121
Alignment:
| Q |
3 |
cttacttaccacacagtcgaatttcagattaccatggtcctttttcg-tcgagaacaaagagttaatatnnnnnnnntacgccagtttgaagnnnnnnnn |
101 |
Q |
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| T |
39979472 |
cttacttaccacacagtcaaatttcagattaccatggtccttttccggttgagaacaaagagttaatataaaaaaaatacgccagtttgaagaaaaaaaa |
39979373 |
T |
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| Q |
102 |
gtactttatatatactgtctttggtagtaatgtgtctgatatgatgacagcaagactagcaagctctgcaaagaaattaaatttcatttaccatgctcaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39979372 |
gtactttatatatactgtctttggtagtaatgtgtctgatatgatgacagcaagactagcaagctctgcaaagaaattaaatatcatttaccatgctcaa |
39979273 |
T |
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| Q |
202 |
ctacctcctcacctatcaggtcttagtattttggctataaaaagatactccccaaacacactttgccacacaagtactcaggttaagacacaaagggaga |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39979272 |
ctacctcctcacctatcaggtcttagtattttggctataaaaagatactccccaaacacactttgccacacaagtactcaggttaagacacaaagggaga |
39979173 |
T |
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| Q |
302 |
gcgagagtgagtgcagttattatacatattcctagtaagtgggagagatatg |
353 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39979172 |
gtgagagtgagtgcagttattatacatattcctagtaagtgggagagatatg |
39979121 |
T |
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