View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13243_low_13 (Length: 334)
Name: NF13243_low_13
Description: NF13243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13243_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 4529847 - 4529542
Alignment:
| Q |
16 |
tgtggcatacatctaaatctcgcacaaccattcaactcaagatgcctaagacttttactgagattttctggtaatatttcaagctcagaacaatcagaaa |
115 |
Q |
| |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4529847 |
tgtggcatacatctcaatctctcacaaccattcaactcaagatgcctaagacttttgttgagattttctggtaatatttcgagctcagaacaatcagaaa |
4529748 |
T |
|
| Q |
116 |
gttt--gagtttgaaggttctgtaggctagtaatgcccggcggaagatctttaagcacaatactctttgatagatcaatatatctcagatgcttcatatc |
213 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4529747 |
gttttagagtttgaaggttctgtaggctagtaatgcccggcggaagatctttaagtacaatactctttgatagatcaatatatctcagatgcttcatctc |
4529648 |
T |
|
| Q |
214 |
ttcaatactatttgggattgctacaatatttaacccacaaagtgtcaacacacgtaagaactttaggcctgaaaaggaaagagcatttgaccgatgcaga |
313 |
Q |
| |
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||||||||||||||||||||| | |||||| || ||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| || ||||| |
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| T |
4529647 |
ttcaatactatttgggattgccagaatattcaatccacaaagtgtcaacacacgtaagaactttaagcctgaaaaggaaagaacgtttgactgacgcaga |
4529548 |
T |
|
| Q |
314 |
taattg |
319 |
Q |
| |
|
|||||| |
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|
| T |
4529547 |
taattg |
4529542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 4398044 - 4398322
Alignment:
| Q |
17 |
gtggcatacatctaaatctcgcacaaccattcaactcaagatgcctaagacttttactgagattttctggtaatatttcaagctcagaacaatcagaaag |
116 |
Q |
| |
|
||||||||||||| |||||| | |||||||| |||||||||||||| |||||| || ||||||||||||| ||||||||||||| ||||||||||| ||| |
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| T |
4398044 |
gtggcatacatctcaatctctcgcaaccatttaactcaagatgcctgagacttctattgagattttctggcaatatttcaagcttagaacaatcagcaag |
4398143 |
T |
|
| Q |
117 |
ttt--gagtttgaaggttctgtaggctagtaatgcccggcggaagatctttaagcacaatactctttgatagatcaatatatctcagatgcttcatatct |
214 |
Q |
| |
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||| ||||||| | |||| |||||||||||||| ||| ||||||| |||||| ||| | || |||||||||||||||||| | ||||||||| ||| |
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| T |
4398144 |
ttttagagtttgcaagttcagtaggctagtaatggtcggaggaagatttttaagtacattgttccgtgatagatcaatatatcttaaatgcttcatttct |
4398243 |
T |
|
| Q |
215 |
tcaatactatttgggattgctacaatatttaacccacaaagtgtcaacacacgtaagaactttaggcctgaaaaggaaa |
293 |
Q |
| |
|
|||||||||||||||||| || ||||||| ||||||||||||||||||||||| |||||||||| |||||| ||||||| |
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| T |
4398244 |
tcaatactatttgggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaaggaaa |
4398322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 4519658 - 4519380
Alignment:
| Q |
17 |
gtggcatacatctaaatctcgcacaaccattcaactcaagatgcctaagacttttactgagattttctggtaatatttcaagctcagaacaatcagaaag |
116 |
Q |
| |
|
||||||||||| | || ||| | |||||||| |||||||||||||| |||||| || ||||||||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
4519658 |
gtggcatacatgtcaaactctcgcaaccatttaactcaagatgcctgagacttctattgagattttctggcaatatttcaagcttagaacaatcagaaag |
4519559 |
T |
|
| Q |
117 |
ttt--gagtttgaaggttctgtaggctagtaatgcccggcggaagatctttaagcacaatactctttgatagatcaatatatctcagatgcttcatatct |
214 |
Q |
| |
|
||| ||||||| | |||| |||||||||||||| ||| ||||||| |||||| ||| | || |||||||||||||||||| | ||||||||| ||| |
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| T |
4519558 |
ttttagagtttgcaagttcagtaggctagtaatggtcggaggaagatttttaagtacattgttccgtgatagatcaatatatcttaaatgcttcatttct |
4519459 |
T |
|
| Q |
215 |
tcaatactatttgggattgctacaatatttaacccacaaagtgtcaacacacgtaagaactttaggcctgaaaaggaaa |
293 |
Q |
| |
|
|||||||||||||||||| || ||||||| ||||||||||||||||||||||| |||||||||| |||||| ||||||| |
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|
| T |
4519458 |
tcaatactatttgggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaaggaaa |
4519380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 4498597 - 4498320
Alignment:
| Q |
18 |
tggcatacatctaaatctcgcacaaccattcaactcaagatgcctaagacttttactgagattttctggtaatatttcaagctcagaacaatcagaaagt |
117 |
Q |
| |
|
|||||||||| | || ||| | |||||||| |||||||||||||| |||||| || ||||||||||||| ||||||||||||| |||||||||||||||| |
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|
| T |
4498597 |
tggcatacatgtcaaactctcgcaaccatttaactcaagatgcctgagacttctattgagattttctggcaatatttcaagcttagaacaatcagaaagt |
4498498 |
T |
|
| Q |
118 |
tt--gagtttgaaggttctgtaggctagtaatgcccggcggaagatctttaagcacaatactctttgatagatcaatatatctcagatgcttcatatctt |
215 |
Q |
| |
|
|| ||||||| | |||| |||||||||||||| ||| ||||||| |||||| ||| | || |||||||||||||||||| | ||||||||| |||| |
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|
| T |
4498497 |
tttagagtttgcaagttcagtaggctagtaatggtcggaggaagatttttaagtacattgttccgtgatagatcaatatatcttaaatgcttcatttctt |
4498398 |
T |
|
| Q |
216 |
caatactatttgggattgctacaatatttaacccacaaagtgtcaacacacgtaagaactttaggcctgaaaaggaaa |
293 |
Q |
| |
|
||||||||||||||||| || ||||||| ||||||||||||||||||||||| |||||||||| |||||| ||||||| |
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|
| T |
4498397 |
caatactatttgggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaaggaaa |
4498320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 18047282 - 18047004
Alignment:
| Q |
17 |
gtggcatacatctaaatctcgcacaaccattcaactcaagatgcctaagacttttactgagattttctggtaatatttcaagctcagaacaatcagaaag |
116 |
Q |
| |
|
||||||||||||| |||||| | |||||||| |||||||||||||| |||||| || ||||||||||||| ||||||||||||| ||||||||||| ||| |
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|
| T |
18047282 |
gtggcatacatctcaatctctcgcaaccatttaactcaagatgcctgagacttctattgagattttctggcaatatttcaagcttagaacaatcagcaag |
18047183 |
T |
|
| Q |
117 |
ttt--gagtttgaaggttctgtaggctagtaatgcccggcggaagatctttaagcacaatactctttgatagatcaatatatctcagatgcttcatatct |
214 |
Q |
| |
|
||| ||||||| | |||| |||||||||||||| ||| ||||||| |||||| ||| | || |||||||||||||||||| | ||||||||| ||| |
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|
| T |
18047182 |
ttttagagtttgcaagttcagtaggctagtaatggtcggaggaagatttttaagtacattgttccgtgatagatcaatatatcttaaatgcttcatttct |
18047083 |
T |
|
| Q |
215 |
tcaatactatttgggattgctacaatatttaacccacaaagtgtcaacacacgtaagaactttaggcctgaaaaggaaa |
293 |
Q |
| |
|
|||||||||||||||||| || ||||||| ||||||||||||||||||||||| |||||||||| |||||| ||||||| |
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|
| T |
18047082 |
tcaatactatttgggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaaggaaa |
18047004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 18033871 - 18034149
Alignment:
| Q |
17 |
gtggcatacatctaaatctcgcacaaccattcaactcaagatgcctaagacttttactgagattttctggtaatatttcaagctcagaacaatcagaaag |
116 |
Q |
| |
|
||||||||||| | || ||| | |||||||| |||||||||||||| |||||| || ||||||||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
18033871 |
gtggcatacatgtcaaactctcgcaaccatttaactcaagatgcctgagacttctattgagattttctggcaatatttcaagcttagaacaatcagaaag |
18033970 |
T |
|
| Q |
117 |
ttt--gagtttgaaggttctgtaggctagtaatgcccggcggaagatctttaagcacaatactctttgatagatcaatatatctcagatgcttcatatct |
214 |
Q |
| |
|
||| ||||||| | |||| |||||||||||||| ||| ||||||| |||||| ||| | || |||||||||||||||||| | ||||||||| ||| |
|
|
| T |
18033971 |
ttttagagtttgcaagttcagtaggctagtaatggtcggaggaagatttttaagtacattgttccgtgatagatcaatatatcttaaatgcttcatttct |
18034070 |
T |
|
| Q |
215 |
tcaatactatttgggattgctacaatatttaacccacaaagtgtcaacacacgtaagaactttaggcctgaaaaggaaa |
293 |
Q |
| |
|
|||||||||||||||||| || ||||||| ||||||||||||||||||||||| |||||||||| |||||| ||||||| |
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|
| T |
18034071 |
tcaatactatttgggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaaggaaa |
18034149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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