View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13243_low_16 (Length: 263)
Name: NF13243_low_16
Description: NF13243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13243_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 54861444 - 54861210
Alignment:
| Q |
12 |
gactgaaatgaaaatggaatttccaatacattggaataggaattaacaaactaacacactacagatgaagatatcaaagatcttgaaggccatgtaagtc |
111 |
Q |
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| T |
54861444 |
gactgcaatgaaaatggaatttccaatacattggaataggaattaacaaactaacacactacagatgaagatatcaaagatcttgaaggccatgtaagtc |
54861345 |
T |
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| Q |
112 |
aattcaaatggtattaagtgttgaaaacaaggtcgttctaaaactgtcaaacaatagtggttagaaatacatctgtatctgggagtcttgtagctgaatg |
211 |
Q |
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| T |
54861344 |
aattcaaatggtattaagtgttgaaaacaaggtcgttctaaaactgtcaaacaatagtggttagaaatacatttgtatctgggagtcttgtagctgaatg |
54861245 |
T |
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| Q |
212 |
agaacctcgcaacnnnnnnngaacttccaaagaac |
246 |
Q |
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| T |
54861244 |
agaacctcgcaactttttttgaacttccaaagaac |
54861210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 215
Target Start/End: Complemental strand, 54856575 - 54856436
Alignment:
| Q |
79 |
aagatatcaaagatcttgaa-ggccatgtaagtcaattcaaatggtattaagtgttgaaaacaaggtcgttctaaaactgtcaaacaatagtggttagaa |
177 |
Q |
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| T |
54856575 |
aagatatcaaagatcttaagtggccaggtaagtcaattcaaatggtattaagtgctgaaaacagggttgttctcatactatcaaacaacagtgtttagaa |
54856476 |
T |
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| Q |
178 |
--atacatctgtatctgggagtcttgtagctgaatgagaa |
215 |
Q |
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| T |
54856475 |
atatacctttgtatctgcgagtcttgtagcagaatgagaa |
54856436 |
T |
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