View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13243_low_23 (Length: 201)
Name: NF13243_low_23
Description: NF13243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13243_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 1e-70; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 25 - 183
Target Start/End: Complemental strand, 20460149 - 20459991
Alignment:
| Q |
25 |
atgattatcaataccataaatcagggagtatgaacgaattttcttgcataaaacctaacagaactttttcatttctaagataaaggcttcattttccaaa |
124 |
Q |
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| T |
20460149 |
atgattatcattaccagaaatcagggagtatgaactagttttcttgcataaaacctaacagaacttattcatttctaagataaaggcttcattttccaaa |
20460050 |
T |
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| Q |
125 |
tagttcacatcctaagatttacatgaaaagtaaagagatttccaaaagatttaaggcct |
183 |
Q |
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| T |
20460049 |
tagttcacatcctaagatttacatgaaaagtaaagagattttcaaaagatttaaggcct |
20459991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 42 - 166
Target Start/End: Complemental strand, 20448853 - 20448729
Alignment:
| Q |
42 |
aaatcagggagtatgaacgaattttcttgcataaaacctaacagaactttttcatttctaagataaaggcttcattttccaaatagttcacatcctaaga |
141 |
Q |
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|||||||||||| ||||| ||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20448853 |
aaatcagggagtgtgaactaattttcctgcataaaacctgacagaacttttgcatttctaagataaaggcttcattttccaaatagttcacatcctaaga |
20448754 |
T |
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| Q |
142 |
tttacatgaaaagtaaagagatttc |
166 |
Q |
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| T |
20448753 |
tttacatgaaaagtaaagacatttc |
20448729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 20277154 - 20277083
Alignment:
| Q |
28 |
attatcaataccataaatcagggagtatgaacgaattttcttgcataaaacctaacagaactttttcatttc |
99 |
Q |
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|||| |||||| |||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
20277154 |
attaccaatactataaatcatggagtgtgaactaattttcttgcataaaacctgacagaactttttcatttc |
20277083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 20442011 - 20441972
Alignment:
| Q |
143 |
ttacatgaaaagtaaagagatttccaaaagatttaaggcct |
183 |
Q |
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| T |
20442011 |
ttacatgaaaagtaaagagattt-caaaagatttaaggcct |
20441972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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