View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13243_low_3 (Length: 693)
Name: NF13243_low_3
Description: NF13243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13243_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 17 - 390
Target Start/End: Complemental strand, 47038023 - 47037650
Alignment:
| Q |
17 |
aattgcaacttttcttactcttttttcgtcctgtttgttagaattgttaacagaggatacatgaaaaaatagataatactgtagacccttgtcaattgtc |
116 |
Q |
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| T |
47038023 |
aattgcaacttttcttactcttttttcgtcctgtttgttagaattgttaacagaggatacatgaaaaaatagataatactgtagacccttgtcaattgtc |
47037924 |
T |
|
| Q |
117 |
ataaataatgtaacctacttttaattaagatgaagaattactctttatttaaatcagtgaataatgcgtttcatgaatatggtgtttggaatttgtaaca |
216 |
Q |
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| T |
47037923 |
ataaataatgtaacctacttttaattaagatgaaaaattactctttatttaaatcagtgaataatgcgtttcatgaatatggtgtttggaatttgtaaca |
47037824 |
T |
|
| Q |
217 |
gggctggacatagataattgaatcaaaataaccatattttgttgattgatattttcttccttaatttgatatgaattttagtttatgaatatgtatgctg |
316 |
Q |
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| T |
47037823 |
gggctggacatagataattgaatcaaaataaccatattttgttgattgatattttcttccttaatttgatatgaattttagtttatgaatatgtatgctg |
47037724 |
T |
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| Q |
317 |
gacatgccaaatgctcaaactcaacacctgtcgagcaaaggttcaatcccgcgaagtccaaatacagataaaga |
390 |
Q |
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| T |
47037723 |
gacatgccaaatgctcaaactcaacacctgtcgagcaaaggttcaatcccgcgaagtccaaatacagataaaga |
47037650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 390 - 686
Target Start/End: Complemental strand, 47037627 - 47037326
Alignment:
| Q |
390 |
aacactactcttagaaccaaacactaggtccaactcaatagaccatcaacgcctataaaaaggcactgttagccatcaaaaggtactaacaatataaagt |
489 |
Q |
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| T |
47037627 |
aacactactcttagacccaaacactaggtccaagtcaatagaccatcaacacctataaaaaggcactgttagccatcaaaaggtaattacaatataaagt |
47037528 |
T |
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| Q |
490 |
ttaacctctcactct-----cttttattagcttgagcgtaaaagtgtgtgcaaatactcacaactcgcatattgacggtcattgctccaattcgcgttga |
584 |
Q |
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| T |
47037527 |
ttaacctctcactctttgctcttttactagcttgagcgtaaaagtgtctgcaaatactcacaactcgcatattgacggttattgctccaattcgcattga |
47037428 |
T |
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| Q |
585 |
ggtagttgttgcttgacaaacaaaatcattctaatcactctatagcaatatgnnnnnnngaagacacttgcgttttttgtgaactatgttatcttgatga |
684 |
Q |
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| T |
47037427 |
ggcggttgttgcttgacaaacaaaatcattctaatcactctatatcaatatgttttttttaagacacttgcgttttttgtgaactatattatcttgatga |
47037328 |
T |
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| Q |
685 |
tg |
686 |
Q |
| |
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|| |
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| T |
47037327 |
tg |
47037326 |
T |
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