View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13243_low_6 (Length: 493)
Name: NF13243_low_6
Description: NF13243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13243_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 19807854 - 19808329
Alignment:
| Q |
1 |
tcaaggatcctggttcaaagctggataaatttgatggacaattgaaggagtctgagttgacagagaaacaatttgaatcattaataaactattttgatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19807854 |
tcaaggatcctggttcaaagctggataaatttgatggacaattgaaggagtctgagttgacagagaaacaatttgaatcattaataaactattttgatga |
19807953 |
T |
|
| Q |
101 |
ggaaaaagcatctggtaaaagttcttattcatctagtttatagaaggagtttcatttcagctgtttctttttatgacgttgatatttttaataacctgat |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19807954 |
ggaaaaagcatcgggtaaaagttcttattcatctagtttatagaaggagtttcatttcagctgtttctttttatgatgttgatatttttaataacctgat |
19808053 |
T |
|
| Q |
201 |
ttacatgtttggattatataagtgcaactatttctagtcttgtttataattattaatcaatttaacactgtctttggtgattcagttaagcttctatatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19808054 |
ctacatgtttggattatataagtgcaactatttctagtcttgtttataattattaatcaatttaacactgtctttggtgattcagttaagcttctatatt |
19808153 |
T |
|
| Q |
301 |
tactttgattataacaattaatataatgatttcctctctcacccatacattccaaaaatccatttctcatcttcatttgctgttgtttctaaaaatatga |
400 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
19808154 |
gactttgactataacaattaatataatgatttcctctctcacccatacattccaaaaatccatttgtcatcttcatttgctgttgtttctaaaaatatga |
19808253 |
T |
|
| Q |
401 |
gggatcttaatcctctgctatccaaatatgcagttgcatctagcacggatgatcaattaagtccaaccattgatgg |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19808254 |
gggatcttaatcctctgctatccaaatatgcagttgcatctagcacggatgatcgattaagtccaaccattgatgg |
19808329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 16)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 227 - 476
Target Start/End: Original strand, 39138231 - 39138480
Alignment:
| Q |
227 |
actatttctagtcttgtttataattattaatcaatttaacactgtctttggtgattcagttaagcttctatatttactttgattataacaattaatataa |
326 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39138231 |
actatttcaagtcttgtttataattattaatcaatttaacactatctttggtgattcagttaagcttctatattgactttgattataacaattaatataa |
39138330 |
T |
|
| Q |
327 |
tgatttcctctctcacccatacattccaaaaatccatttctcatcttcatttgctgttgtttctaaaaatatgagggatcttaatcctctgctatccaaa |
426 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39138331 |
tgattccctctctcacccatacattccaaaaatcctattgtcatcttcatttgctgttgcttctaaaaatatgagggatcttaattctctgctatccaaa |
39138430 |
T |
|
| Q |
427 |
tatgcagttgcatctagcacggatgatcaattaagtccaaccattgatgg |
476 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39138431 |
tatgcagttgcatctaacacggatgatcaattaagtccaaccattgatgg |
39138480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 39137904 - 39138044
Alignment:
| Q |
1 |
tcaaggatcctggttcaaagctggataaatttgatggacaattgaaggagtctgagttgacagagaaacaatttgaatcattaataaactattttgatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39137904 |
tcaaggatcctggttcaaagctggataaatttgatggacaattgaaggagcctgaactgacagagaaacaatttgaatcattgataaactattttgatga |
39138003 |
T |
|
| Q |
101 |
ggaaaaagcatctggtaaaagttcttattcatctagtttat |
141 |
Q |
| |
|
|||||||| ||| ||||| |||||||||||||||||||||| |
|
|
| T |
39138004 |
ggaaaaagaatcgggtaagagttcttattcatctagtttat |
39138044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 2 - 206
Target Start/End: Complemental strand, 39381519 - 39381315
Alignment:
| Q |
2 |
caaggatcctggttcaaagctggataaatttgatggacaattgaaggagtctgagttgacagagaaacaatttgaatcattaataaactattttgatgag |
101 |
Q |
| |
|
||||||||||| ||||||||| ||||||| ||||||||| |||| ||| || | ||||||| ||||||| |||| |||||| ||| ||| |||| ||| |
|
|
| T |
39381519 |
caaggatcctgattcaaagctaaataaattggatggacaaatgaaagagcctaaattgacaggtaaacaatatgaagcattaagaaaatatattgacgag |
39381420 |
T |
|
| Q |
102 |
gaaaaagcatctggtaaaagttcttattcatctagtttatagaaggagtttcatttcagctgtttctttttatgacgttgatatttttaataacctgatt |
201 |
Q |
| |
|
|| ||| |||||||||| |||||||||||| ||||||| ||| || ||||||||||| |||||||||| |||| ||||||| ||||| |||| |||| |
|
|
| T |
39381419 |
gagcaagaatctggtaaatgttcttattcatatagtttactgaaagaatttcatttcagttgtttcttttaatgatgttgatacttttattaacttgatc |
39381320 |
T |
|
| Q |
202 |
tacat |
206 |
Q |
| |
|
||||| |
|
|
| T |
39381319 |
tacat |
39381315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 33 - 200
Target Start/End: Complemental strand, 39421809 - 39421642
Alignment:
| Q |
33 |
gatggacaattgaaggagtctgagttgacagagaaacaatttgaatcattaataaactattttgatgaggaaaaagcatctggtaaaagttcttattcat |
132 |
Q |
| |
|
|||| |||| |||||||| ||||||||||||||||||| | || | | || | | ||||||||||||||||| | |||||||||| |||||||||||| |
|
|
| T |
39421809 |
gatgaacaactgaaggagcctgagttgacagagaaacagtatgctttaatagaagaatattttgatgaggaaaatgaatctggtaaatgttcttattcat |
39421710 |
T |
|
| Q |
133 |
ctagtttatagaaggagtttcatttcagctgtttctttttatgacgttgatatttttaataacctgat |
200 |
Q |
| |
|
||| ||||| ||| ||||||||||||| ||||||||| |||| ||||||||||||||||| ||||| |
|
|
| T |
39421709 |
ctaatttattgaaagagtttcatttcaactgtttcttacaatgatgttgatatttttaataatctgat |
39421642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 39459286 - 39459487
Alignment:
| Q |
1 |
tcaaggatcctggttcaaagctggataaatttgatggacaattgaaggagtctgagttgacagagaaacaatttgaatcattaataaactattttgatga |
100 |
Q |
| |
|
|||||||||| | |||||||| |||| |||||||||||| |||||||| |||||||||||| |||||||| |||| ||||||| |||||||||||||| |
|
|
| T |
39459286 |
tcaaggatccagagtcaaagcttaataattttgatggacaagtgaaggagcctgagttgacagtgaaacaatatgaaccattaatgaactattttgatga |
39459385 |
T |
|
| Q |
101 |
ggaaaaagcatctggtaaaagttcttattcatctagtttatagaaggagtttcatttcagctgtttctttttatgacgttgatatttttaataacctgat |
200 |
Q |
| |
|
||||| || ||| ||||| |||||||||||| ||| |||| ||| | |||||||||| | |||| ||| |||| | || ||||||| |||||||||| |
|
|
| T |
39459386 |
ggaaacagaatcgggtaagtgttcttattcatttagcttattgaa--aatttcatttcaacaatttcatttaatgatg-tgttattttttataacctgat |
39459482 |
T |
|
| Q |
201 |
ttaca |
205 |
Q |
| |
|
|||| |
|
|
| T |
39459483 |
ctaca |
39459487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 44 - 134
Target Start/End: Complemental strand, 39473375 - 39473285
Alignment:
| Q |
44 |
gaaggagtctgagttgacagagaaacaatttgaatcattaataaactattttgatgaggaaaaagcatctggtaaaagttcttattcatct |
134 |
Q |
| |
|
||||||| |||||||||||||||||| || |||| |||||||||| |||||||||||||||| || ||| |||||| |||||||||||||| |
|
|
| T |
39473375 |
gaaggagcctgagttgacagagaaacgatatgaaccattaataaaatattttgatgaggaaatagaatcgggtaaatgttcttattcatct |
39473285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 39397844 - 39397731
Alignment:
| Q |
15 |
tcaaagctggataaatttgatggacaattgaaggagtctgagttgacagagaaacaatttgaatcattaataaactattttgatgaggaaaaagcatctg |
114 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||| |||||||||||| |||||||| |||| | |||| ||| ||| | |||||||||||| ||| | |
|
|
| T |
39397844 |
tcaaggctggataaatttgatggacaactgaaggagcctgagttgacagggaaacaatatgaagcgttaaaaaaatatatcaatgaggaaaaagaatcgg |
39397745 |
T |
|
| Q |
115 |
gtaaaagttcttat |
128 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
39397744 |
gtaaaggttcttat |
39397731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 2 - 141
Target Start/End: Original strand, 39152610 - 39152749
Alignment:
| Q |
2 |
caaggatcctggttcaaagctggataaatttgatggacaattgaaggagtctgagttgacagagaaacaatttgaatcattaataaactattttgatgag |
101 |
Q |
| |
|
|||||||| || |||||||| ||||| ||||||||| | ||||||| ||| |||||||||||||||| || | |||||||||| |||||||||||| |
|
|
| T |
39152610 |
caaggatcttgagtcaaagctaaataaacatgatggacagtcgaaggagcatgatttgacagagaaacaatatggaccattaataaaatattttgatgag |
39152709 |
T |
|
| Q |
102 |
gaaaaagcatctggtaaaagttcttattcatctagtttat |
141 |
Q |
| |
|
|||| || ||| |||||| ||| ||||| |||||||||| |
|
|
| T |
39152710 |
gaaatagaatcaggtaaatgtttttatttgtctagtttat |
39152749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 39414789 - 39414690
Alignment:
| Q |
3 |
aaggatcctggttcaaagctggataaatttgatggacaattgaaggagtctgagttgacagagaaacaatttgaatcattaataaactattttgatgagg |
102 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||| ||||||| |||| | |||||||| |||||||||||| |
|
|
| T |
39414789 |
aaggatcctgagtcaaagctggaaaaatttgatggacaccggaaggagtctgagttgagagaaaaacaatatgaaccgttaataaaagattttgatgagg |
39414690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 472
Target Start/End: Complemental strand, 39380937 - 39380852
Alignment:
| Q |
387 |
ttctaaaaatatgagggatcttaatcctctgctatccaaatatgcagttgcatctagcacggatgatcaattaagtccaaccattg |
472 |
Q |
| |
|
||||| |||||||||||| ||||| ||||||||| |||||||||||||||||| || |||||||| |||||||| ||||||| |
|
|
| T |
39380937 |
ttctataaatatgagggagcttaaatatctgctatctaaatatgcagttgcatcttacatggatgatcgattaagtcataccattg |
39380852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 396 - 475
Target Start/End: Complemental strand, 39473198 - 39473119
Alignment:
| Q |
396 |
tatgagggatcttaatcctctgctatccaaatatgcagttgcatctagcacggatgatcaattaagtccaaccattgatg |
475 |
Q |
| |
|
||||||||| ||||| ||||||||| |||||||||| | ||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
39473198 |
tatgagggagcttaaatatctgctatctaaatatgcagctacatcttacatggatgatcaattaagtccaaccactgatg |
39473119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 189
Target Start/End: Original strand, 39161948 - 39162043
Alignment:
| Q |
94 |
ttgatgaggaaaaagcatctggtaaaagttcttattcatctagtttatagaaggagtttcatttcagctgtttctttttatgacgttgatattttt |
189 |
Q |
| |
|
||||||||||||||| ||| |||||| |||||| ||||||||| |||| ||| || ||| ||| | ||||| ||||| |||| | |||||||||| |
|
|
| T |
39161948 |
ttgatgaggaaaaagaatccggtaaatgttcttcttcatctagattattgaaagaattttattataactgttccttttaatgatgatgatattttt |
39162043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 189
Target Start/End: Complemental strand, 39207246 - 39207151
Alignment:
| Q |
94 |
ttgatgaggaaaaagcatctggtaaaagttcttattcatctagtttatagaaggagtttcatttcagctgtttctttttatgacgttgatattttt |
189 |
Q |
| |
|
||||||||||||||| ||| |||||| |||||| ||||||||| |||| ||| || ||| ||| | ||||| ||||| |||| | |||||||||| |
|
|
| T |
39207246 |
ttgatgaggaaaaagaatccggtaaatgttcttcttcatctagattattgaaagaattttattataactgttccttttaatgatgatgatattttt |
39207151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 39389078 - 39389027
Alignment:
| Q |
90 |
tattttgatgaggaaaaagcatctggtaaaagttcttattcatctagtttat |
141 |
Q |
| |
|
|||||||||| |||||||| ||| |||||| ||||||||||||| ||||||| |
|
|
| T |
39389078 |
tattttgatggggaaaaagaatccggtaaatgttcttattcatccagtttat |
39389027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 39370156 - 39370282
Alignment:
| Q |
15 |
tcaaagctggataaatttgatggacaattgaaggagtctgagttgacagagaaacaatttgaatcattaataaactattttgatgaggaaaaagcatctg |
114 |
Q |
| |
|
|||||| || ||||||| ||||||||| | ||| || |||||| |||| ||||||||| ||| |||||| | | || ||| |||||||||| | | |
|
|
| T |
39370156 |
tcaaagatgaataaattggatggacaactaaagaagcctgagtcgacaaagaaacaatatgacgcattaacagagcatattgccgaggaaaaagatttgg |
39370255 |
T |
|
| Q |
115 |
gtaaaagttcttattcatctagtttat |
141 |
Q |
| |
|
||||| ||||||||||||||||||||| |
|
|
| T |
39370256 |
gtaaatgttcttattcatctagtttat |
39370282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 39215755 - 39215795
Alignment:
| Q |
114 |
ggtaaaagttcttattcatctagtttatagaaggagtttca |
154 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||| |||||||| |
|
|
| T |
39215755 |
ggtaaatgttcttattcatctagtttattgaaagagtttca |
39215795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 96 - 206
Target Start/End: Original strand, 45342158 - 45342268
Alignment:
| Q |
96 |
gatgaggaaaaagcatctggtaaaagttcttattcatctagtttatagaaggagtttcatttcagctgtttctttttatgacgttgatatttttaataac |
195 |
Q |
| |
|
||||||||||||| || |||||||| || ||||||||||||||||| ||| || |||||||||| || |||||||| ||| |||||||||||||||||| |
|
|
| T |
45342158 |
gatgaggaaaaagaatttggtaaaatttgttattcatctagtttattgaaagaatttcatttcaactatttcttttgttgatgttgatatttttaataac |
45342257 |
T |
|
| Q |
196 |
ctgatttacat |
206 |
Q |
| |
|
||||| ||||| |
|
|
| T |
45342258 |
ctgatctacat |
45342268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 16113347 - 16113508
Alignment:
| Q |
15 |
tcaaagctggataaatttgatggacaattgaaggagtctgagttgacagagaaacaatttgaatcattaataaactattttgatgaggaaaaagcatctg |
114 |
Q |
| |
|
||||||||| | |||||| |||||| |||||||| ||||||| |||| |||||| | |||| |||| | ||| || |||| |||||||||| ||| | |
|
|
| T |
16113347 |
tcaaagctgaacgaatttggcggacaactgaaggagcctgagttaacagggaaacactctgaagcatttaaaaaacatattgacgaggaaaaagaatcgg |
16113446 |
T |
|
| Q |
115 |
gtaaaagttcttattcatctagtttatagaaggagtttcatttcagctgtttctttttatga |
176 |
Q |
| |
|
|||| ||||| ||||||||||||||| ||| | ||||||||| ||| ||||||| |||| |
|
|
| T |
16113447 |
gtaagtgttctcattcatctagtttattgaaaaaaattcatttcaactgcttcttttaatga |
16113508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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