View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13243_low_9 (Length: 400)
Name: NF13243_low_9
Description: NF13243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13243_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 35644249 - 35644621
Alignment:
| Q |
19 |
atacgactcttcttccacttggctatcatgatcagatctgctctttgccttgtcggaaccttagttgagggtttatgacaaataaaataagtataccgaa |
118 |
Q |
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| T |
35644249 |
atacgactcttcttccatttggctatcatgatcaaatctgct--tcgccttgtcgaaaccttagttgtgggtttatgacaaataaaataagtataccgaa |
35644346 |
T |
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| Q |
119 |
tcacacaagcaatcaagtagtaagtagatattgtttttacagggattgttgttcgactcaccaattatattaagcttaattaaaaacaataaatcgggag |
218 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35644347 |
tcacacaagtaatcaagtagtaagtagatattgtttttacagagattgttgttcgactcgacaattatattaagcttaattaaaaacaataaatcgggag |
35644446 |
T |
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| Q |
219 |
tttgcataggatttggtgtatgcaaagaaaataaaataggttaacacaaaatgatgacgaacagttatgatttctcgattcctctatatcttcttgtttg |
318 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||| |||| || || ||| |||||||| |||||||| |
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| T |
35644447 |
tttgcataggatttggtatatgcaaagaaagtaaaataggttaacacaaaatgatgacgaacggttaggattccttgaatcccctatatctccttgtttg |
35644546 |
T |
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| Q |
319 |
at-aatcaagttactggttcaattacaatttgaggtttgtgttcatgatgtttaccaagtagacctatctgtgct |
392 |
Q |
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| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
35644547 |
gtaaatcaagttactggttcaattacaatttgaggttcgtgttcatgatgtttaccaagtagacctatttgtgct |
35644621 |
T |
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