View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13244_high_12 (Length: 355)
Name: NF13244_high_12
Description: NF13244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13244_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 348
Target Start/End: Complemental strand, 8880515 - 8880188
Alignment:
| Q |
19 |
atatatgagataaggtagttctatattagctgagattcccaaatgattttttggcacatttttatttgtgtatatcttataaaaatttaaaagtcaagac |
118 |
Q |
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| T |
8880515 |
atatatgagataaggtagttctatagtagctgagattcctaaatgattttttggtacaattttaattgtgtat--cttataaaattttaaaagtgaagac |
8880418 |
T |
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| Q |
119 |
ctattttagccgttgacgaaaaatccgagagccaattttgtccgttacccnnnnnnntacaacatttagtccttcataaaaattaattggaacattttag |
218 |
Q |
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| T |
8880417 |
ctattttagccgttgaggaaaaatccgagagccaattttgtccgttacccaaaaaaatacaacatttagtccttcataaaaactaattggaacattttag |
8880318 |
T |
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| Q |
219 |
tccctaattgaacatttaacgaaaaacttactctttttggtccaatttgtaatgttatcatccatgttttgaatacaccttggactggtatttacatacg |
318 |
Q |
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| T |
8880317 |
tccctaattgaacatttaacgaaaaacttactctttttggtccaatttgtaatgttatcatccatgttttgaatacaccttggactggtatttacatacg |
8880218 |
T |
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| Q |
319 |
tgaacacaccatatcaccacaggttctgct |
348 |
Q |
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| T |
8880217 |
tgaacacaccttatcaccacatgttatgct |
8880188 |
T |
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