View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13244_high_15 (Length: 314)

Name: NF13244_high_15
Description: NF13244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13244_high_15
NF13244_high_15
[»] chr1 (11 HSPs)
chr1 (17-303)||(9093168-9093454)
chr1 (61-301)||(9007288-9007528)
chr1 (69-302)||(8863896-8864129)
chr1 (79-303)||(8868142-8868366)
chr1 (89-302)||(9099598-9099811)
chr1 (62-302)||(9136251-9136491)
chr1 (89-302)||(9065526-9065739)
chr1 (59-302)||(8972247-8972490)
chr1 (79-260)||(9072061-9072242)
chr1 (222-297)||(9475363-9475438)
chr1 (96-146)||(9444110-9444160)


Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 9093168 - 9093454
Alignment:
Q  17 cttatttatgtttctactccaacaaggtagcagcagtagtctttctattgaacaagaacattcttgtcctccttcatcttgtggcaaaatttccaacata 116  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9093168 cttatttatgtttttactccaacaaggtagcagcagtagtctttctattgaacaagaacattcttgtcccccttcatcttgtggcaaaatttccaacata 9093267  T
Q  117 acttacccatttcgactaaaaaatgacccaattcattgcgggaacaaaaattacgagctatcttgtgaaaataatgtaacaacaataaatttgtactctg 216  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9093268 acttatccatttcgactaaaaaatgacccaattcattgcgggaacagaagttacgagctatcttgtgaaaataatgtaacaacaataaatttgtactctg 9093367  T
Q  217 caaaatacaatgtgaagtccatcaactacaacaatttcacaatcaggctagtggatcctggaattcaacaagataattgctcttcat 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9093368 caaaatacaatgtgaagtccatcaactacaacaatttcacaatcaggctagtggatcctggaattcaacaagataattgctcttcat 9093454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 61 - 301
Target Start/End: Complemental strand, 9007528 - 9007288
Alignment:
Q  61 ctattgaacaagaacattcttgtcctccttcatcttgtggcaaaatttccaacataacttacccatttcgactaaaaaatgacccaattcattgcgggaa 160  Q
    ||||||| ||||| ||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||| |    
T  9007528 ctattgagcaagagcatacatgtccaccttcatcttgtggcaaaatttccaacataacttacccatttcgattaaataatgacccaattaattgcgggga 9007429  T
Q  161 caaaaattacgagctatcttgtgaaaataatgtaacaacaataaatttgtactctgcaaaatacaatgtgaagtccatcaactacaacaatttcacaatc 260  Q
    |||||  |||||  || | |||||||||||||| |||||  |||||||||| || | ||||||  ||||| | |||||||||||||||||||||||||||    
T  9007428 caaaaggtacgaattagcatgtgaaaataatgtgacaactttaaatttgtattcaggaaaatatcatgtgcaatccatcaactacaacaatttcacaatc 9007329  T
Q  261 aggctagtggatcctggaattcaacaagataattgctcttc 301  Q
     |  | || |||| |||| ||||||||  ||||||||||||    
T  9007328 cgattggttgatcttggagttcaacaatctaattgctcttc 9007288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 69 - 302
Target Start/End: Original strand, 8863896 - 8864129
Alignment:
Q  69 caagaacattcttgtcctccttcatcttgtggcaaaatttccaacataacttacccatttcgactaaaaaatgacccaattcattgcgggaacaaaaatt 168  Q
    ||||| ||| ||||||  |||||||||||||| |||||||| ||||||| ||| ||||||||| ||||| |||| ||||||||||||||| |||  |  |    
T  8863896 caagagcatacttgtctcccttcatcttgtggtaaaatttcaaacataagttatccatttcgattaaaagatgatccaattcattgcggggacagcaggt 8863995  T
Q  169 acgagctatcttgtgaaaataatgtaacaacaataaatttgtactctgcaaaatacaatgtgaagtccatcaactacaacaatttcacaatcaggctagt 268  Q
    | ||||||||||||| ||||||||| |||||  || ||||||| || | ||||||  ||||| | ||||||||||||||||||||||||||||| || ||    
T  8863996 atgagctatcttgtgcaaataatgttacaactttatatttgtattcgggaaaatatcatgtgcaatccatcaactacaacaatttcacaatcagactggt 8864095  T
Q  269 ggatcctggaattcaacaagataattgctcttca 302  Q
     ||||| ||| ||||||||  |||||||||||||    
T  8864096 tgatcccggagttcaacaatctaattgctcttca 8864129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 79 - 303
Target Start/End: Original strand, 8868142 - 8868366
Alignment:
Q  79 cttgtcctccttcatcttgtggcaaaatttccaacataacttacccatttcgactaaaaaatgacccaattcattgcgggaacaaaaattacgagctatc 178  Q
    ||||||| |||||||||||||| |||||||| ||||||| ||| ||||||||| ||||| |||| ||||||||||||||| | |  |  || || |||||    
T  8868142 cttgtccaccttcatcttgtggtaaaatttcaaacataagttatccatttcgattaaaagatgatccaattcattgcggggatagcaggtatgaactatc 8868241  T
Q  179 ttgtgaaaataatgtaacaacaataaatttgtactctgcaaaatacaatgtgaagtccatcaactacaacaatttcacaatcaggctagtggatcctgga 278  Q
    |||||||||||| || |||||  |||||||||| || | ||||||  ||||||| |||||||||||||||||||||| |||| |  | || |||  ||||    
T  8868242 ttgtgaaaataacgtgacaaccttaaatttgtattccggaaaatattatgtgaaatccatcaactacaacaatttcataatccgattggttgatattgga 8868341  T
Q  279 attcaacaagataattgctcttcat 303  Q
    ||||||||||||||||| |||||||    
T  8868342 attcaacaagataattgttcttcat 8868366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 89 - 302
Target Start/End: Original strand, 9099598 - 9099811
Alignment:
Q  89 ttcatcttgtggcaaaatttccaacataacttacccatttcgactaaaaaatgacccaattcattgcgggaacaaaaattacgagctatcttgtgaaaat 188  Q
    |||||| ||||| ||||| || ||||||| ||||||||||||| ||||| |||||||||  || |||||  |||  |  ||||| ||| |||||||||||    
T  9099598 ttcatcctgtgggaaaatatcaaacataagttacccatttcgattaaaagatgacccaaaacaatgcggagacagcaggtacgaactagcttgtgaaaat 9099697  T
Q  189 aatgtaacaacaataaatttgtactctgcaaaatacaatgtgaagtccatcaactacaacaatttcacaatcaggctagtggatcctggaattcaacaag 288  Q
    ||||| |||| | || |||| ||||||||||||||| ||||  |||||||||||||||| |||||||||||| |  |||| ||||||| | ||||||||     
T  9099698 aatgtgacaaaattatatttatactctgcaaaataccatgtccagtccatcaactacaataatttcacaatccgattagttgatcctgaagttcaacaat 9099797  T
Q  289 ataattgctcttca 302  Q
     |||||||||||||    
T  9099798 ctaattgctcttca 9099811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 302
Target Start/End: Original strand, 9136251 - 9136491
Alignment:
Q  62 tattgaacaagaacattcttgtcctccttcatcttgtggcaaaatttccaacataacttacccatttcgactaaaaaatgacccaattcattgcgggaac 161  Q
    |||||| ||||||||| |||| || ||||||| |||||||||||||||||| ||||  |  || |||||| ||||| |||||||||  || |||||  ||    
T  9136251 tattgatcaagaacatacttgccccccttcatattgtggcaaaatttccaagataagctctccttttcgattaaaagatgacccaaaacactgcggtgac 9136350  T
Q  162 aaaaattacgagctatcttgtgaaaataatgtaacaacaataaatttgtactctgcaaaatacaatgtgaagtccatcaactacaacaatttcacaatca 261  Q
    |  | ||| || ||| |||||||||||||| ||||||   || |||| ||||||||||||||  ||||| ||||||||||||||||| |||||||||||     
T  9136351 agcagttatgaactagcttgtgaaaataatataacaagtttatatttatactctgcaaaatattatgtgcagtccatcaactacaacgatttcacaatcc 9136450  T
Q  262 ggctagtggatcctggaattcaacaagataattgctcttca 302  Q
    |  | || ||||||||| ||||||||  |||||||||||||    
T  9136451 gattggttgatcctggagttcaacaatctaattgctcttca 9136491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 89 - 302
Target Start/End: Complemental strand, 9065739 - 9065526
Alignment:
Q  89 ttcatcttgtggcaaaatttccaacataacttacccatttcgactaaaaaatgacccaattcattgcgggaacaaaaattacgagctatcttgtgaaaat 188  Q
    |||||||||||||||||| || || |||| ||| ||||||||| ||||| |||| ||||| || ||||| ||||  || || || |||||||||||||||    
T  9065739 ttcatcttgtggcaaaatatcaaaaataagttatccatttcgattaaaagatgatccaatacactgcggtaacagcaagtatgaactatcttgtgaaaat 9065640  T
Q  189 aatgtaacaacaataaatttgtactctgcaaaatacaatgtgaagtccatcaactacaacaatttcacaatcaggctagtggatcctggaattcaacaag 288  Q
    ||||| |||||  || ||||||||||  ||||||| |||||    |||||||||||||||||||| |||||||| || || ||||||||| ||||| ||     
T  9065639 aatgtgacaactttatatttgtactccacaaaatataatgtccgttccatcaactacaacaattttacaatcagactggttgatcctggagttcaagaaa 9065540  T
Q  289 ataattgctcttca 302  Q
      ||||||||||||    
T  9065539 tgaattgctcttca 9065526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 59 - 302
Target Start/End: Complemental strand, 8972490 - 8972247
Alignment:
Q  59 ttctattgaacaagaacattcttgtcctccttcatcttgtggcaaaatttccaacataacttacccatttcgactaaaaaatgacccaattcattgcggg 158  Q
    |||||||||  || ||||| ||||||| ||||| ||||||||||||||||  ||||||  ||| ||||||||| ||||| |||||||||  | ||| ||     
T  8972490 ttctattgagaaaaaacatacttgtcccccttcctcttgtggcaaaattttaaacatatgttatccatttcgattaaaagatgacccaaaacgttgtgga 8972391  T
Q  159 aacaaaaattacgagctatcttgtgaaaataatgtaacaacaataaatttgtactctgcaaaatacaatgtgaagtccatcaactacaacaatttcacaa 258  Q
     |||  |  || || ||| |||||||||||||||| |||||  || |||| || |||||||||||  ||||   ||| ||||||||||||||||||||||    
T  8972390 gacagcaggtatgaactagcttgtgaaaataatgtcacaactttatatttatattctgcaaaatatcatgtccggtcgatcaactacaacaatttcacaa 8972291  T
Q  259 tcaggctagtggatcctggaattcaacaagataattgctcttca 302  Q
    || |  | || ||||||||||||||||||  |||||||||||||    
T  8972290 tccgattggttgatcctggaattcaacaatctaattgctcttca 8972247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 79 - 260
Target Start/End: Original strand, 9072061 - 9072242
Alignment:
Q  79 cttgtcctccttcatcttgtggcaaaatttccaacataacttacccatttcgactaaaaaatgacccaattcattgcgggaacaaaaattacgagctatc 178  Q
    ||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| || || ||||||| |  || |||||  | |  |  ||||| |||||    
T  9072061 cttgtccaccttcttcttgtggcaaaatttccaacataagttacccatttcgattacaagatgaccccaaacactgcggagaaagcaggtacgaactatc 9072160  T
Q  179 ttgtgaaaataatgtaacaacaataaatttgtactctgcaaaatacaatgtgaagtccatcaactacaacaatttcacaatc 260  Q
    |||||||||||||||  ||||  || ||||||| || | ||||||  ||||| | |||||||||||||||||||||||||||    
T  9072161 ttgtgaaaataatgtggcaactttatatttgtattcgggaaaatattatgtgcaatccatcaactacaacaatttcacaatc 9072242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 297
Target Start/End: Original strand, 9475363 - 9475438
Alignment:
Q  222 tacaatgtgaagtccatcaactacaacaatttcacaatcaggctagtggatcctggaattcaacaagataattgct 297  Q
    |||||||||||||| ||||||||| | || | ||||||||| ||||| ||||||||||||||| | ||| ||||||    
T  9475363 tacaatgtgaagtcaatcaactacgataactacacaatcagactagttgatcctggaattcaagaggatgattgct 9475438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 9444110 - 9444160
Alignment:
Q  96 tgtggcaaaatttccaacataacttacccatttcgactaaaaaatgaccca 146  Q
    ||||| |||||||||||||||||||| ||||| ||||||||| | ||||||    
T  9444110 tgtggaaaaatttccaacataacttatccattccgactaaaacacgaccca 9444160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University