View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13244_high_2 (Length: 922)
Name: NF13244_high_2
Description: NF13244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13244_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 666 - 900
Target Start/End: Complemental strand, 28111627 - 28111393
Alignment:
| Q |
666 |
gttccttttcggtgagttccatgtataggaaattggatgacatggtggtgtctgacccactgtcagaggtgcagctgttggcgttcacacatatttggaa |
765 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28111627 |
gttccttttcggtgagttccatgtataggaaattggatgacatagtggtgtctgacccactgtcagaggtgcagctgttggcgttcacacatatttggaa |
28111528 |
T |
|
| Q |
766 |
aagcccggcaccggccaaggtgattgccttttcttggaagcttttacgtggaaggatcccgaccagagtcaatctttccaggaggcatgtcttaccacca |
865 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28111527 |
aagcccggcaccggccaaggtgattgccttttcttggaagcttttacgtggaaggatcccgaccagagtcaatcttttcaggaggcatgtcttaccacca |
28111428 |
T |
|
| Q |
866 |
gattctgctctttcctgtgtgttgtgtcatggggt |
900 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
28111427 |
gattctgctctttcctgtgtgttgtgtcatggggt |
28111393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 220 - 599
Target Start/End: Original strand, 52411825 - 52412202
Alignment:
| Q |
220 |
gtgtacaaaagaataataaagtttcaaatttggcatgcttacaccttgaaacttttgtatagtcccaaattaaccaatgtggctgtcaaattaaaagttt |
319 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| || | | | |||||||| | || |||||||||| ||||||| |
|
|
| T |
52411825 |
gtgtacagaagaataataaagtttcaaatttggcatgcttacaccttgaactttttgcgtaatgcaatattaaccattttgactgtcaaatttaaagttt |
52411924 |
T |
|
| Q |
320 |
tcattaagcaaatcaaagttacataatataagctgagacaaaacacacaatgcataagactccaaaatcttgtctgtcaccattatcactcaccaaaacc |
419 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||| || |||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
52411925 |
tcattaagcaaatcaaagtcacataatataagctcagaccaaacacacaatgcataacac--caaaattctgtcagtcaccattatcactcaccaaaacc |
52412022 |
T |
|
| Q |
420 |
tgaagaaaagcacaccaatttctctttacaatgtttttctgttgcagttaagttttatgcagtgattcaagaatagcagaaaaatttgcagtcaagaata |
519 |
Q |
| |
|
||||||||| |||||||||||||||| ||| ||||||| |||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
52412023 |
tgaagaaaatcacaccaatttctcttcacagtgtttttttgttgctgttaagttttatgaagtgattgaagaacagcagaaaaatttgcagtcaagaata |
52412122 |
T |
|
| Q |
520 |
agagtgaattgtatagcagaagaacttttttattctcattgcgtacaatattggatagtacaattgatttgatgataata |
599 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||| | || ||||||||| | |||||||||||||||| ||||| |
|
|
| T |
52412123 |
agaatgaattgtatagcagaataacttttttattctcatttcatataatattggacaatacaattgatttgatgctaata |
52412202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 500 - 599
Target Start/End: Complemental strand, 40393408 - 40393309
Alignment:
| Q |
500 |
aaaatttgcagtcaagaataagagtgaattgtatagcagaagaacttttttattctcattgcgtacaatattggatagtacaattgatttgatgataata |
599 |
Q |
| |
|
|||||||||||||||| |||||| || |||||||| || ||||||||| |||||| |||||| || || ||||||||| ||||||||||||||||||||| |
|
|
| T |
40393408 |
aaaatttgcagtcaaggataagaatggattgtatatcaaaagaactttgttattcccattgcatataacattggataggacaattgatttgatgataata |
40393309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 602 - 667
Target Start/End: Complemental strand, 40383266 - 40383201
Alignment:
| Q |
602 |
ccttatttattgcatttcaatggtgtaaaactaaaataggacaccctaatgttagatggagagagt |
667 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40383266 |
ccttatttattgcatttcaatcatgtaaaactaaaataggacaccctaatgttagacggagagagt |
40383201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 757 - 828
Target Start/End: Complemental strand, 33131847 - 33131776
Alignment:
| Q |
757 |
tatttggaaaagcccggcaccggccaaggtgattgccttttcttggaagcttttacgtggaaggatcccgac |
828 |
Q |
| |
|
||||||||| || ||||||||| | |||||||||||||| ||||||||||| || || | ||||||||||| |
|
|
| T |
33131847 |
tatttggaagagtccggcaccgacaaaggtgattgccttctcttggaagctctttcgcgataggatcccgac |
33131776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 756 - 810
Target Start/End: Original strand, 1611236 - 1611290
Alignment:
| Q |
756 |
atatttggaaaagcccggcaccggccaaggtgattgccttttcttggaagctttt |
810 |
Q |
| |
|
||||||||||||| ||||||||| |||| ||| | ||||| |||||||||||||| |
|
|
| T |
1611236 |
atatttggaaaagtccggcaccgtccaaagtggtggccttctcttggaagctttt |
1611290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 1e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 419 - 596
Target Start/End: Complemental strand, 7773808 - 7773627
Alignment:
| Q |
419 |
ctgaagaaaagcacaccaatttctctttacaatgtttttctgttgcagttaagttttatgcagtgattcaagaatagcagaaaaatttgcagtcaagaat |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7773808 |
ctgaagaaaagcacaccaatttctctttacaatgttttttagttgctgttaagttttatgcagtgattcaagaatagcagaaaaatttgcagtcaagaat |
7773709 |
T |
|
| Q |
519 |
aagagtgaattgtatagcagaagaac----ttttttattctcattgcgtacaatattggatagtacaattgatttgatgata |
596 |
Q |
| |
|
|||| |||||||||||| ||||||| |||||||||| |||| | || ||||||| |||||||| || ||||||||||| |
|
|
| T |
7773708 |
aagaatgaattgtatagtagaagaagaaatttttttattcccatttcatataatattgcatagtacatttaatttgatgata |
7773627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 782 - 900
Target Start/End: Original strand, 24836738 - 24836856
Alignment:
| Q |
782 |
aaggtgattgccttttcttggaagcttttacgtggaaggatcccgaccagagtcaatctttccaggaggcatgtcttaccaccagattctgctctttcct |
881 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24836738 |
aaggtgattgccttttctgggaagcttttacgtggaaggatcccgaccagagtcaatcttttcaggaggcatgtcttaccaccagattctgctctttcct |
24836837 |
T |
|
| Q |
882 |
gtgtgttgtgtcatggggt |
900 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
24836838 |
gtgcgttgtgtcatggggt |
24836856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 8e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 666 - 901
Target Start/End: Original strand, 34325847 - 34326082
Alignment:
| Q |
666 |
gttccttttcggtgagttccatgtataggaaattggatgacatggtggtgtctgacccactgtcagaggtgcagctgttggcgttcacacatatttggaa |
765 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| | ||| | | ||||||||||||| ||||| ||||||||||||| |
|
|
| T |
34325847 |
gttccttttcggtgagttccatgtataggaaattggatgaattggtggtgatcgtcccgcgaacggaggtgcagctgtcagcgttttcacatatttggaa |
34325946 |
T |
|
| Q |
766 |
aagcccggcaccggccaaggtgattgccttttcttggaagcttttacgtggaaggatcccgaccagagtcaatctttccaggaggcatgtcttaccacca |
865 |
Q |
| |
|
|| ||||||||| | |||||||||||||||||||||||| || | || | |||||| ||||| |||| ||| || || |||||||||||| | ||||| |
|
|
| T |
34325947 |
gagtccggcaccgccaaaggtgattgccttttcttggaagtttcttcgcgaaaggataccgactagagccaacctatcgaggaggcatgtccttccaccg |
34326046 |
T |
|
| Q |
866 |
gattctgctctttcctgtgtgttgtgtcatggggtt |
901 |
Q |
| |
|
|| || |||||||||||||||||||| |||||||| |
|
|
| T |
34326047 |
gactccactctttcctgtgtgttgtgtgatggggtt |
34326082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 512 - 599
Target Start/End: Original strand, 14676938 - 14677025
Alignment:
| Q |
512 |
caagaataagagtgaattgtatagcagaagaacttttttattctcattgcgtacaatattggatagtacaattgatttgatgataata |
599 |
Q |
| |
|
|||||||||| ||| | |||||| || |||||||| |||||| |||||| || ||||||||||||||||||||||||| |||||||| |
|
|
| T |
14676938 |
caagaataagtgtggactgtatatcaagagaactttattattcccattgcatataatattggatagtacaattgatttgttgataata |
14677025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 540 - 596
Target Start/End: Complemental strand, 17667411 - 17667355
Alignment:
| Q |
540 |
agaacttttttattctcattgcgtacaatattggatagtacaattgatttgatgata |
596 |
Q |
| |
|
|||||||| |||||| |||||| || |||||||||||||| |||||||||| ||||| |
|
|
| T |
17667411 |
agaactttattattcccattgcatataatattggatagtataattgatttgttgata |
17667355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University