View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13244_low_10 (Length: 369)
Name: NF13244_low_10
Description: NF13244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13244_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 34393625 - 34393469
Alignment:
| Q |
15 |
attttcttctctaatatacccaccnnnnnnncgtatttagagagagacagaaaaaagaaacacaagggtggttgaaaaactgataaactgccttatagtc |
114 |
Q |
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| T |
34393625 |
attttcttctctattatacccaccaaaaaaacgtatttagagagagacagaaaaaagaaacacaagggtggttgaaaaactgataaactgccttatagtc |
34393526 |
T |
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| Q |
115 |
ctaagcaaaaaagacaagtcaaataaatcaaccctctcatttccttaatcttatctt |
171 |
Q |
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| T |
34393525 |
ctaagcaaaaaagacaagtcaaataaatcaaccctctcatttccttaatcttatctt |
34393469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 274 - 359
Target Start/End: Complemental strand, 34393371 - 34393286
Alignment:
| Q |
274 |
cacaatattgttcatctaatggattctgttgtctctgaattagaaggcacacttctaaaaaactcagatgtattctcctacttcat |
359 |
Q |
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| T |
34393371 |
cacaatattgttcatctaatggattctgttgtctctgaattagaaggcacacttctaaaaaactcagatgtattctcctacttcat |
34393286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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