View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13244_low_11 (Length: 366)
Name: NF13244_low_11
Description: NF13244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13244_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 5371225 - 5370866
Alignment:
| Q |
1 |
atggttcaggatatttgatgatgtgagaaaacgggaagcaagcaagatttatgagtatagtttttcagaccacaccttgtgtgtaaatgatgttgtgatt |
100 |
Q |
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| T |
5371225 |
atggttcaggatatttgatgatgtgagaagacgggaagcaagcaagatttatgagtatagtttttcagaccacactttgtgtgtaaatgatgttgtgatc |
5371126 |
T |
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| Q |
101 |
ggttatggaggatgcaatgcaattatagcttcagcgtcagatgatcggacgtgtaaggtttgttttactgtttttatgtggcagtgttgttgtcgaaaaa |
200 |
Q |
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| T |
5371125 |
ggttatggaggatgcaatgcaattatagcttcagcgtcagatgatcggacgtgtaaggtttgttttactgtttttatgtggcagtgttgttgtcgaaaaa |
5371026 |
T |
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| Q |
201 |
tagataaacaatggaatatatttatcgcttcatatttactatagcaagattaaattgtcaatctttactagttgaaaattttaatcatttatggttacat |
300 |
Q |
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| T |
5371025 |
tagataaacaatggaatatatttatcgcatcatatttactatagcaagattaaattgtcaatctttactagttgaaaattttaatcatttatggttacat |
5370926 |
T |
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| Q |
301 |
atcaaaactttcataacgctggggggaaaccatctgttcttgttcttgggtgatgatgtc |
360 |
Q |
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| T |
5370925 |
atcaaaactttcataacgctggggggaaaccatctgttcttgttcttgggtgataatgtc |
5370866 |
T |
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Back To:
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Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 12764249 - 12764423
Alignment:
| Q |
1 |
atggttcaggatatttgatgatgtgagaaaacgggaagcaagcaagatttatgagtatagtttttcagaccacaccttgtgtgtaaatgatgttgtgatt |
100 |
Q |
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||||||||| ||||||||||| |||||| ||||||| || || | || |||||||||||||| || |||||| || |||||| ||||||||||||| |
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| T |
12764249 |
atggttcagtttatttgatgatttgagaagccgggaagaaaagaatctctacgagtatagtttttcggagcacaccatgcgtgtaactgatgttgtgatt |
12764348 |
T |
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| Q |
101 |
ggttatggaggatgcaatgcaattatagcttcagcgtcagatgatcggacgtgtaaggtttgttttactgttttt |
175 |
Q |
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||| ||||||| |||||||||||||||| |||||| ||||| |||||||| |||||||||||| ||||| ||||| |
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| T |
12764349 |
ggtaatggagggtgcaatgcaattatagtttcagcatcagacgatcggacttgtaaggtttgtgttactcttttt |
12764423 |
T |
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