View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13244_low_15 (Length: 318)
Name: NF13244_low_15
Description: NF13244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13244_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 44191037 - 44190748
Alignment:
| Q |
1 |
tgttatgtttaatctttatgcagtggcttgattactgaaatatgttattgaatattcaactaatctgttatgattttccttttctacagctttgaaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44191037 |
tgttatgtttaatctttatgcagtggcttgattactgaaatatgttattgaatattcaactaatctgttatgattttccttttctacagctttgaaagaa |
44190938 |
T |
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| Q |
101 |
ctttactctcattacatggaagcatggaaatcttggtactctgaagttgctgggaagaggtcaacgcaagttttgtagtaacttatatgcaacaaagtca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44190937 |
ctttactctcattacatggaagcatggaaatcttggtactctgaagttgctgggaagaggtcaacgcaagttttgtagtaacttatatgcaacaaagtca |
44190838 |
T |
|
| Q |
201 |
aataaaatagnnnnnnnnnnnctttcgaaaagagagatattccattgtagtgtacttagacacattctagatgtgccaacatagaatgtac |
291 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44190837 |
aataaaatag-ttttttttttctttcgaaaagagagatattccattgtagtgtacttagacacattctagatgtgccaacatagaatgtac |
44190748 |
T |
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